mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 478,151 | C→T | G570D (GGC→GAC) | acrB ← | efflux RND transporter permease AcrB |
| RA | 479,735 | G→T | A42E (GCA→GAA) | acrB ← | efflux RND transporter permease AcrB |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,298,631 | C→A | R181S (CGT→AGT) | oppC → | oligopeptide ABC transporter permease OppC |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 2,133,642 | Δ1 bp | coding (1452/1854 nt) | asmA ← | outer membrane assembly protein AsmA |
| RA | 2,959,722 | A→C | M691R (ATG→AGG) | ptsP ← | phosphoenolpyruvate‑‑protein phosphotransferase |
| RA | 3,332,778 | C→T | W216* (TGG→TAG) | mlaF ← | phospholipid ABC transporter ATP‑binding protein MlaF |
| RA | 3,338,215 | T→C | L47P (CTT→CCT) | rpoN → | RNA polymerase factor sigma‑54 |
| RA | 4,322,729 | C→T | E124K (GAA→AAA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3645396 = | NA (NA) | 110 (1.110) | 95/494 | 0.1 | 97.4% | pseudogene (746/747 nt) | BW25113_RS18155 | hypothetical protein |
| ? | NZ_CP009273 | = 3801044 | 3 (0.030) | coding (451/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | = 3646589 | NA (NA) | 103 (1.050) | 95/492 | 0.1 | 99.0% | pseudogene (2/379 nt) | BW25113_RS18165 | hypothetical protein |
| ? | NZ_CP009273 | 3801040 = | 1 (0.010) | coding (455/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||