mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 767,208 | G→T | E99* (GAA→TAA) | cydA → | cytochrome ubiquinol oxidase subunit I |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 914,598 | +T | intergenic (‑58/‑93) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 2,479,900 | G→T | C683F (TGT→TTT) | evgS → | acid‑sensing system histidine kinase EvgS |
| RA | 4,322,729 | C→T | E124K (GAA→AAA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 81 (0.790) | 68/496 | 1.2 | 41.8% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 1059844 | 113 (1.100) | coding (353/1257 nt) | yccE | YccE family protein | |||||
| * | ? | NZ_CP009273 | 1089701 = | NA (NA) | 104 (1.010) | 91/496 | 0.2 | 100% | intergenic (+11/+30) | dgcT/BW25113_RS05345 | GGDEF domain‑containing protein/IS3‑like element IS3 family transposase |
| ? | NZ_CP009273 | = 3800851 | 0 (0.000) | coding (644/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | 1203246 = | 11 (0.110) | 84 (0.880) | 72/464 | 0.7 | 87.4% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 14 (0.150) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 11 (0.110) | 84 (0.880) | 81/464 | 0.3 | 87.4% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 14 (0.150) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2163652 = | NA (NA) | 87 (0.850) | 82/496 | 0.5 | 98.9% | intergenic (‑2/‑65) | BW25113_RS10890/BW25113_RS10900 | DeoR/GlpR family DNA‑binding transcription regulator/IS3‑like element IS3 family transposase |
| ? | NZ_CP009273 | 3800849 = | 1 (0.010) | coding (646/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 94 (0.920) | 77/496 | 0.7 | 96.9% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 4081178 | 3 (0.030) | coding (817/1056 nt) | yiiG | YiiG family protein | |||||
| * | ? | NZ_CP009273 | = 2376004 | 93 (0.910) | 101 (0.980) | 86/496 | 0.3 | 52.1% | coding (918/918 nt) | rbn | ribonuclease BN |
| ? | NZ_CP009273 | = 3124699 | NA (NA) | intergenic (+146/+4) | BW25113_RS15490/yghQ | IS5‑like element IS5 family transposase/lipopolysaccharide biosynthesis protein | |||||
| * | ? | NZ_CP009273 | = 3646590 | NA (NA) | 89 (0.870) | 80/496 | 0.5 | 98.9% | pseudogene (3/379 nt) | BW25113_RS18165 | hypothetical protein |
| ? | NZ_CP009273 | 4081175 = | 1 (0.010) | coding (814/1056 nt) | yiiG | YiiG family protein | |||||