| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP043523 | = 1895196 | 18 (0.040) | 473 (0.960) +TGAGTGAG |
165/270 | 2.1 | 96.4% | coding (316/891 nt) | FTN78_chr1944 | Mobile element protein |
| ? | CP043523 | 1895197 = | NA (NA) | coding (317/891 nt) | FTN78_chr1944 | Mobile element protein | |||||
AGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTGTGTCAGTCGATTCGTAATTTCAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGCTACAATGCTA > CP043523/1895049‑1895301 | aGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAtt > 2:4565535/1‑149 (MQ=11)aGTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAtt < 2:2742530/150‑2 (MQ=11) gTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAttg < 2:2955826/150‑3 (MQ=11) gAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAttgat > 2:786918/1‑146 (MQ=11) aaCACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAttgatgt < 1:4102667/150‑7 (MQ=11) acTTAAATCAAATCACCAATTTTCTCAAAGTTTATTTCCTAATTTCCTAAAATATTCTCGCTTTGTCCGCCTTTGTAATGCCCTCTTACCGAGTATCCAACTCATTCGCCAATCACTCGTCTTTAAAGAGGTTCAAGTAATTAgttagtg < 1:2911152/150‑6 (MQ=11) ttcaaGCTCAGCACCAATTGGCTTAAAGTTTATTTCCTAATTTCCTAGATTATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCa < 2:889647/147‑1 (MQ=0) gccaaGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCattatt < 1:598070/147‑1 (MQ=1) gcaaaGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTGGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAGCGCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGATTGATGTGTCTattatt > 2:4435011/4‑150 (MQ=0) ccaacttgCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATTAGTGTATCCATTATTGACAGCtt > 2:1407336/8‑150 (MQ=0) ccaacttgCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCATTATTGACAGCtt < 2:4288276/143‑1 (MQ=1) ccaacttgCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCATTATTGACAGCtt > 1:1652699/8‑150 (MQ=1) gcacAAAGTATATTTCCTAATTTCCTAGAATATTGTCGCTTTGGCCGCCGATGTAATGCCCTCTTAACGAGTATCCAAGTCATTCGCCAAGCACTCGTCATTAAAGAGATTGAAGGAATGAGTAGAACCAGTATTGACAGCTTCCACAta > 2:1985571/4‑149 (MQ=1) gtctATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGATTGATGTGTCTATTATTGACAGCTTTCCCATTCCTTtgt > 1:3964971/4‑150 (MQ=0) ttccctaatttcctaGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGATTGATGTGTCTATTATTGACAGCTTTCCCATTCCTTTGTGTCAg > 2:826489/4‑150 (MQ=0) ccaaatatcctaGAATATTCTCGCTTAGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTGTGTCAgcct > 2:2742004/4‑147 (MQ=0) ctttttccGAGTATCCAAGGCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTGTGTCAGCCGATTCGTAATTTCAGAAGCAAAGGTCTTGGAGATTATGCAAATGtt < 2:403950/144‑1 (MQ=1) tcgaaGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTGTGTCAGCCGATTCGTAATTTCAGAAGCAAAGGTCTTGGAGATTATGCAAATGTTGGCTACAATGCTa < 2:3926799/147‑1 (MQ=0) | AGTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAAGGAATGAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTGTGTCAGTCGATTCGTAATTTCAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGCTACAATGCTA > CP043523/1895049‑1895301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |