| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP043523 | = 1895196 | 23 (0.050) | 493 (0.980) +TGAGTGAG |
179/266 | 1.4 | 95.6% | coding (316/891 nt) | FTN78_chr1944 | Mobile element protein |
| ? | CP043523 | 1895197 = | NA (NA) | coding (317/891 nt) | FTN78_chr1944 | Mobile element protein | |||||
GTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAA‑GGAA‑TGAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTGTGTCAGTCGATTCGTAATTTCAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGCTACAATG > CP043523/1895050‑1895298 | gTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑t > 2:3776637/1‑148 (MQ=11)gTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑t < 2:2236512/148‑1 (MQ=11)gTGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑t < 2:1647896/148‑1 (MQ=11) tGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑tt < 2:3617523/148‑2 (MQ=11) tGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑tt > 2:2563931/1‑147 (MQ=11) tGAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑tt > 1:3644974/1‑147 (MQ=11) gAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttg > 2:97838/1‑146 (MQ=11) gAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttg < 2:3543810/148‑3 (MQ=11) gAAACACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttg > 2:2766637/1‑146 (MQ=11) aaaCACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttga > 1:990829/1‑145 (MQ=2) aaaCACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttga < 2:648307/148‑4 (MQ=11) aaaCACGTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttga < 2:2056102/148‑4 (MQ=11) aaCACTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttgat > 1:1104853/1‑144 (MQ=11) acacTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttgatg > 1:27342/1‑143 (MQ=2) cacTTAAAGCAAAGCACCAATTGGCTCAAAGTCTATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑ttgatgt > 1:3348264/1‑142 (MQ=2) gtctATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAT‑TGA‑TGTGTCTATTATTGACAGCTTTCCCATTCCttt > 2:3312797/4‑148 (MQ=0) gtctATTCCCTAATTTCCTAGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAT‑TGA‑TGTGTCTATTATTGACAGCTTTCCCATTCCttt > 2:4532578/4‑148 (MQ=0) ttccctaatttcctaGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAT‑TGA‑TGTGTCTATTATTGACAGCTTTCCCATTCCTTTGTGTc > 1:3627637/4‑148 (MQ=0) ttccctaatttcctaGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAT‑TGA‑TGTGTCTATTATTGACAGCTTTCCCATTCCTTTGTGTc > 1:2789664/4‑148 (MQ=0) ttccctaatttcctaGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAT‑TGA‑TGTGTCTATTATTGACAGCTTTCCCATTCCTTTGTGTc > 1:1162735/4‑148 (MQ=0) ttccctaatttcctaGAATATTCTCGCTTTGTTCATCGTTGTAATGCACTCCTACTGAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAA‑GGGATTGA‑TGTGTCTATTATTGACAGCTTTCCCATTCCTTTGTGTc > 2:351681/4‑148 (MQ=0) actgAGTATTCAACTCATTCGCCAAGCTCTCGTCTTTAAAGAAGTTGAAGGGAT‑TGA‑TGTGTCTATTATTGACAGCTTTCCCATTCCTTTGTGTCAGCCGATTCGTAATTTTAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGc > 1:1595935/4‑148 (MQ=1) attcAACTCATTCGCCAGGCTCTCGTCTTTAAAGAAGTTGAA‑GGGA‑TTGATGTGTCTATTTTTGACAGCTTTCCCATTCCTTTGTGTCAGCCGATTCGTAATTTTAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGCTACAATg < 2:3410563/145‑1 (MQ=1) | GTGAAACACTTAAAGCTAAGCACCAATTGGCTCAAAGTTTATTTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGAA‑GGAA‑TGAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTGTGTCAGTCGATTCGTAATTTCAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGCTACAATG > CP043523/1895050‑1895298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |