mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,104,614 | 0 | T | C | 38.0% | 37.0 / 50.2 | 50 | K121R (AAA→AGA) | cpxA | sensor histidine kinase CpxA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2577881 = | 26 (0.680) | 3 (0.080) | 3/406 | 4.5 | 10.4% | coding (497/2280 nt) | maeB | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+)) |
| ? | NC_000913 | = 2580301 | 26 (0.690) | coding (666/2004 nt) | tktB | transketolase 2 | |||||
| * | ? | NC_000913 | = 1144595 | 35 (0.920) | 3 (0.080) | 3/412 | 4.5 | 7.9% | coding (94/321 nt) | yceQ | DUF2655 domain‑containing protein YceQ |
| ? | NC_000913 | = 3036030 | 35 (0.920) | coding (177/1023 nt) | prfB | peptide chain release factor RF2 | |||||
| * | ? | NC_000913 | = 793688 | 27 (0.710) | 3 (0.080) | 3/404 | 4.5 | 5.5% | coding (101/1473 nt) | modF | ABC family protein ModF |
| ? | NC_000913 | 3676724 = | 76 (2.030) | coding (1627/2061 nt) | yhjG | AsmA family protein YhjG | |||||