mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,411,503 | 0 | C | T | 64.4% | 43.1 / 41.8 | 45 | A78V (GCG→GTG) | fis | DNA‑binding transcriptional dual regulator Fis |
| * | NC_000913 | 4,104,443 | 0 | A | C | 25.0% | 57.3 / 22.5 | 36 | L178R (CTG→CGG) | cpxA | sensor histidine kinase CpxA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 59 (1.460) | 11 (0.280) | 11/420 | 2.4 | 18.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 39 (1.010) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4168265 | 55 (1.360) | 7 (0.190) +CTTGCGAAGCAGACTGATAC |
5/398 | 3.9 | 13.2% | intergenic (+65/‑107) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| ? | NC_000913 | 4168372 = | 46 (1.140) | noncoding (1/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | 1207790 = | 35 (0.870) | 4 (0.110) | 4/406 | 4.3 | 11.9% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 27 (0.720) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||