| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3790742 = | 311 (1.710) | 3 (0.020) | 3/176 | 14.9 | 1.0% | coding (584/873 nt) | htrL | HtrL |
| ? | NC_000913 | 3790760 = | 294 (1.700) | coding (566/873 nt) | htrL | HtrL | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3790837‑3790742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATT > NC_000913/3790760‑3790851 ATTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTT > 2:4614152/1‑93ATTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTT > 2:3914911/1‑93ATTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTT > 2:2601888/1‑93ATTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTT < 2:1324351/93‑1ATTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTT < 2:1254905/93‑1 TTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTT > 2:4044460/1‑93 TTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTT > 1:2519359/1‑93 TTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTT < 2:3081361/93‑1 GAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTTGA < 1:1120071/93‑1 GAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTTGA < 1:280437/93‑1 AATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTTGAGAT < 2:3622093/93‑1 AAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTTGAGATGTGACAGTAAGCCCTTTTTT < 2:664630/90‑1 AAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTTGAGATGTGACAGTAAGCCCTTTTTT > 1:664630/1‑90 TTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAC > 1:817360/1‑93 TTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAC > 1:817237/1‑93 TTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAC < 2:1336861/93‑1 TTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAC > 2:2142233/1‑93 TTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAC > 2:2909863/1‑93 TTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAC < 1:2050270/93‑1 TTGACATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTGCTTTCATCAAATGGTAAATCCCAAATTTTCAATCCTCGAGTTAC < 1:4654995/93‑1 TGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACA < 1:1984992/93‑1 GAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACAT < 2:2195037/93‑1 GAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACAT < 2:2197397/93‑1 GAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACAT > 1:3583186/1‑93 GAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACAT < 1:3475578/93‑1 AGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATT > 1:2314090/1‑93 ATTGAAAATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTCAACAACAGGTTTTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3790837‑3790742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATT > NC_000913/3790760‑3790851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |