BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3790742 =	311 (1.710)	3 (0.020)	3/176	14.9	1.0%	coding (584/873 nt)	htrL	HtrL
*	?	NC_000913	3790760 =	294 (1.700)	3 (0.020)	3/176	14.9	1.0%	coding (566/873 nt)	htrL	HtrL
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 309 total aligned reads displayed.

AGAATTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTT  >  NC_000913/3790668‑3790852

aGAATTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTgag                                                                                              >  2:3970630/1‑93 (MQ=255)

 gAATTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTgaga                                                                                             <  1:2702982/93‑1 (MQ=255)

 gAATTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTgaga                                                                                             <  2:507512/93‑1 (MQ=255)

 gAATTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTgaga                                                                                             >  1:661565/1‑93 (MQ=255)

 gAATTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTgaga                                                                                             <  2:2358265/93‑1 (MQ=255)

   aTTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGAtg                                                                                           >  1:2348042/1‑93 (MQ=255)

   aTTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGAtg                                                                                           <  1:3428747/93‑1 (MQ=255)

   aTTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGAtg                                                                                           <  1:4746392/93‑1 (MQ=255)

   aTTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGAtg                                                                                           <  2:1229458/93‑1 (MQ=255)

    ttCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGAtgt                                                                                          >  1:1545005/1‑93 (MQ=255)

     tCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGAtgtg                                                                                         <  2:1389583/93‑1 (MQ=255)

     tCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGAtgtg                                                                                         >  2:656355/1‑93 (MQ=255)

       tttCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAACTCAAAAACCTGTTGTTGAGATGTGaa                                                                                       >  1:1334242/1‑92 (MQ=255)

       tttCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGAc                                                                                       <  1:3473327/93‑1 (MQ=255)

       tttCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGAc                                                                                       >  2:931105/1‑93 (MQ=255)

       tttCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGAc                                                                                       <  1:104006/93‑1 (MQ=255)

       ttaccATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGAc                                                                                       <  1:2499538/90‑1 (MQ=255)

        ttCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACa                                                                                      >  2:1980658/1‑93 (MQ=255)

        ttCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACa                                                                                      <  1:830321/93‑1 (MQ=255)

           cATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTa                                                                                   >  1:3942404/1‑93 (MQ=255)

           cATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTa                                                                                   >  1:3273998/1‑93 (MQ=255)

            ttttATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTaa                                                                                  <  2:3689670/92‑1 (MQ=255)

            aTTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAACTCAAAAACCTGTTGTGAAGATGTGACGGTaa                                                                                  >  1:1120398/1‑93 (MQ=255)

            aTTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTaa                                                                                  <  1:4454897/93‑1 (MQ=255)

            aTTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTaa                                                                                  >  1:4523206/1‑93 (MQ=255)

            aTTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTaa                                                                                  >  1:3887774/1‑93 (MQ=255)

             tttATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAg                                                                                 >  1:4355763/1‑93 (MQ=255)

              ttATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGc                                                                                >  1:536039/1‑93 (MQ=255)

               tATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGcc                                                                               <  2:4640944/93‑1 (MQ=255)

                  gCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCtt                                                                            <  2:787723/93‑1 (MQ=255)

                  gCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCtt                                                                            <  2:4256761/93‑1 (MQ=255)

                    tgtgAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCtttt                                                                          <  1:1210838/93‑1 (MQ=255)

                     gtgAACCAACAATTGCGCCCCCAATAATCTATACATGATTGCCAAGCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCttttt                                                                         <  1:2008598/93‑1 (MQ=255)

                       gAACCAACAATGGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCttttttt                                                                       <  2:568127/93‑1 (MQ=255)

                            aacaaTTGCGCCCCCAATGATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGt                                                                  <  1:1289582/93‑1 (MQ=255)

                            aacaaTTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGt                                                                  >  2:4478792/1‑93 (MQ=255)

                            aacaaTTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGt                                                                  >  2:1797492/1‑93 (MQ=255)

                               aaTTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGaa                                                               >  1:2624782/1‑93 (MQ=255)

                                   gcgcCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGa                                                           <  1:2182175/93‑1 (MQ=255)

                                   gcgcCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGa                                                           >  2:695819/1‑93 (MQ=255)

                                   gcgcCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGa                                                           <  1:2889605/93‑1 (MQ=255)

                                    cgcCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGAt                                                          <  2:3852318/93‑1 (MQ=255)

                                    cgcCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGAt                                                          <  2:2290533/93‑1 (MQ=255)

                                      cccccAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGc                                                        >  2:2127574/1‑93 (MQ=255)

                                        cccAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCAt                                                      >  1:369947/1‑93 (MQ=255)

                                          cAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCt                                                    <  2:281998/93‑1 (MQ=255)

                                            ataataTATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTa                                                  <  1:4402902/93‑1 (MQ=255)

                                            ataataTATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTa                                                  <  1:2405014/93‑1 (MQ=255)

                                            ataataTATACATGATTGCCAATAATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTa                                                  <  2:2632181/93‑1 (MQ=255)

                                             taataTATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTAc                                                 >  2:1670631/1‑93 (MQ=255)

                                             taataTATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTAc                                                 >  2:1021491/1‑93 (MQ=255)

                                               atatatACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACtt                                               <  1:1427987/93‑1 (MQ=255)

                                               atatatACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACtt                                               <  1:1889267/93‑1 (MQ=255)

                                                tatataCATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTCAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACttt                                              >  1:928207/1‑93 (MQ=255)

                                                  tataCATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTtca                                            >  1:3765004/1‑93 (MQ=255)

                                                    taCATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTtcatc                                          >  1:3108316/1‑93 (MQ=255)

                                                       aTGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCaaa                                       >  1:1979027/1‑93 (MQ=255)

                                                        tGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAAt                                      >  1:114586/1‑93 (MQ=255)

                                                        tGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAAt                                      >  2:1367519/1‑93 (MQ=255)

                                                         gATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATg                                     <  2:372568/93‑1 (MQ=255)

                                                         gATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATg                                     <  2:411358/93‑1 (MQ=255)

                                                          aTTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATgg                                    >  2:3553696/1‑93 (MQ=255)

                                                           ttGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATggg                                   <  2:4322676/93‑1 (MQ=255)

                                                              ccAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGaaa                                >  2:4662243/1‑93 (MQ=255)

                                                               cAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAAt                               >  1:4284839/1‑93 (MQ=255)

                                                                aaTCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAACTGGGAAATc                              >  1:814406/1‑93 (MQ=255)

                                                                aaTCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATc                              >  2:1604390/1‑93 (MQ=255)

                                                                 aTCATGAAATCAAAAACCTGTTGTTGAGATGTGAGAGTAAGCCCTTTTTTTATATGGAAAAGATGCATCTTACTTTCATCAAATGGGAAATcc                             >  2:2975222/1‑93 (MQ=255)

                                                                  tCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATccc                            >  1:873195/1‑93 (MQ=255)

                                                                  tCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATccc                            >  2:210640/1‑93 (MQ=255)

                                                                  tCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATccc                            >  1:2745158/1‑93 (MQ=255)

                                                                    aTGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCaa                          >  1:4571293/1‑93 (MQ=255)

                                                                    aTGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCaa                          >  1:1601830/1‑93 (MQ=255)

                                                                    aTGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCaa                          >  2:1696604/1‑93 (MQ=255)

                                                                     tGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCaaa                         >  1:1636886/1‑93 (MQ=255)

                                                                     tGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCaaa                         <  2:2511281/93‑1 (MQ=255)

                                                                     tGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCaaa                         <  1:3175590/93‑1 (MQ=255)

                                                                      gAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAAt                        <  1:1630576/93‑1 (MQ=255)

                                                                        aaTCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAAttt                      >  1:295277/1‑93 (MQ=255)

                                                                        aaTCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAAttt                      <  2:4182362/93‑1 (MQ=255)

                                                                         aTCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAAtttt                     >  1:3036106/1‑93 (MQ=255)

                                                                            aaaaaCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCaa                  <  1:2519359/93‑1 (MQ=255)

                                                                            aaaaaCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCaa                  <  2:4044460/93‑1 (MQ=255)

                                                                            aaaaaCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCaa                  >  2:3081361/1‑93 (MQ=255)

                                                                             aaaaCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAAt                 <  2:3914911/93‑1 (MQ=255)

                                                                             aaaaCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAAt                 >  2:1324351/1‑93 (MQ=255)

                                                                             aaaaCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAAt                 >  2:1254905/1‑93 (MQ=255)

                                                                               aaCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATcc               <  1:587454/93‑1 (MQ=255)

                                                                                aCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCt              <  1:1732484/93‑1 (MQ=255)

                                                                                aCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCt              <  2:2172147/93‑1 (MQ=255)

                                                                                aCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCt              <  2:3376770/93‑1 (MQ=255)

                                                                                aCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCt              <  1:3564159/93‑1 (MQ=255)

                                                                                aCCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTAAAAAGATGCATCTTTCTTTCATCAAATGGGAAATCCCAAATTTTCAATCCt              <  1:1410369/93‑1 (MQ=255)

                                                                                 ccTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTc             >  1:4100563/1‑93 (MQ=255)

                                                                                  cTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCg            >  2:3470647/1‑93 (MQ=255)

                                                                                  cTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCg            >  1:3966906/1‑93 (MQ=255)

                                                                                       gttgAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTa       >  1:4239660/1‑93 (MQ=255)

                                                                                        ttgAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAc      <  1:2050270/93‑1 (MQ=255)

                                                                                        ttgAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTAc      >  2:2909863/1‑93 (MQ=255)

                                                                                           agaTGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACAtt   >  1:2314090/1‑93 (MQ=255)

AGAATTCTTTCCATTTATGCTGTGAACCAACAATTGCGCCCCCAATAATATATACATGATTGCCAATCATGAAATCAAAAACCTGTTGTTGAGATGTGACAGTAAGCCCTTTTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTT  >  NC_000913/3790668‑3790852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.