| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,156,257 | (CCA)2→1 | coding (594‑596/930 nt) | yqhG → | hypothetical protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3156256 | 2 (0.010) | 372 (1.120) | 140/178 | 0.2 | 99.5% | coding (593/930 nt) | yqhG | hypothetical protein |
| ? | NC_000913 | 3156260 = | 2 (0.010) | coding (597/930 nt) | yqhG | hypothetical protein | |||||
Only 100 of 398 total aligned reads displayed.
AGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCACCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACA > NC_000913/3156164‑3156348 | aGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCA < 2:4391539‑M1/93‑1 (MQ=255)aGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCA > 2:7099490‑M1/1‑93 (MQ=255)aGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCA < 1:6527976‑M1/93‑1 (MQ=255) gAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAg < 2:3720805‑M1/93‑2 (MQ=255) gAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAg < 2:5134266‑M1/93‑2 (MQ=255) aCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggc > 1:179451‑M1/1‑90 (MQ=255) aCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggc > 1:3676647‑M1/1‑90 (MQ=255) aCAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCAGACTCTTACCGCCAggc > 1:269668‑M1/1‑90 (MQ=255) aGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcgg > 2:2622670‑M1/1‑88 (MQ=255) gCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggt < 1:2117136‑M1/93‑7 (MQ=255) gCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggt > 1:5474829‑M1/1‑87 (MQ=255) cGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggtta > 1:7051415‑M1/1‑85 (MQ=255) gAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaag > 1:4577505‑M1/1‑83 (MQ=255) cTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgcctt > 2:8054720‑M1/1‑78 (MQ=255) tttGTTGCCGAGCTCTTTGAACATATTGCTGATTATAGCTGGCAGTGGACGTGGGTCGTTTCCGCCTCTTGCCGCCAggcggttaatgccttc < 2:7222012‑M1/93‑17 (MQ=255) tttGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttc > 2:2030106‑M1/1‑77 (MQ=255) tttGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttc < 1:8499909‑M1/93‑17 (MQ=255) tttGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttc > 1:6762991‑M1/1‑77 (MQ=255) ttgttgCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttct < 1:7437148‑M1/93‑18 (MQ=255) ttgttgCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGGGGTTTCCGACTCTTACCGCCAggcggttaatgccttct > 1:4221032‑M1/1‑76 (MQ=255) tgttgCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttcta > 1:1018851‑M1/1‑75 (MQ=255) tgttgCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttcta < 2:288188‑M1/93‑19 (MQ=255) gttgGCCAACTCTTTTAACATCTTGCTGATTATATCTGGTCGTGGACGTGGGTGGTTTCCGCCTCTGACCG‑‑‑CCAGGCGGTTAATGCCTTCtat < 1:2968435/93‑1 (MQ=255) gttgCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctat > 2:1098496‑M1/1‑74 (MQ=255) gttgCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctat < 1:3122497‑M1/93‑20 (MQ=255) ttgCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctata < 1:8639412‑M1/93‑21 (MQ=255) ccGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaa > 2:4693513‑M1/1‑70 (MQ=255) cGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaac < 1:6301495‑M1/93‑25 (MQ=255) gAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaacc > 2:6715547‑M1/1‑68 (MQ=255) aaCTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaacca > 1:3827038‑M1/1‑67 (MQ=255) aaCTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaacca < 1:1543199‑M1/93‑27 (MQ=255) ctTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccacctt < 2:5174819‑M1/93‑31 (MQ=255) ctTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccacctt > 1:8380194‑M1/1‑63 (MQ=255) ctTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccacctt > 1:191853‑M1/1‑63 (MQ=255) ttGAACATATTGCTGATTATCGCTGGCCGTAGACGTGAGTGGTTTCCGACTCATACCG‑‑‑CCAGACGAATAATGCCTTCTATACACCCACCTTCa < 1:7790543/93‑1 (MQ=255) tGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaa < 1:4430642‑M1/93‑34 (MQ=255) gAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaag < 1:434646‑M1/93‑35 (MQ=255) aCATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagac > 2:6899959‑M1/1‑57 (MQ=255) atatTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacgg < 2:3125087‑M1/93‑39 (MQ=255) tatTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggc > 2:3380938‑M1/1‑54 (MQ=255) tatTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggc > 2:7912868‑M1/1‑54 (MQ=255) ttGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggcca < 1:4900672‑M1/93‑42 (MQ=255) ttGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggcca > 1:6796652‑M1/1‑52 (MQ=255) ttGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggcca < 1:5993621‑M1/93‑42 (MQ=255) gCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaat < 2:6066504‑M1/93‑44 (MQ=255) tGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataa < 2:2086204‑M1/93‑46 (MQ=255) ttATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcc < 2:7364255‑M1/93‑49 (MQ=255) ttATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcc < 1:1620575‑M1/93‑49 (MQ=255) tataGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatccc > 1:5000666‑M1/1‑44 (MQ=255) tataGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatccc < 2:8276031‑M1/93‑50 (MQ=255) taGCTGGCCGTGGGGGTGTGTGGTTTCCGCCTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccga < 1:2520018‑M1/93‑52 (MQ=255) gCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatg > 1:4038860‑M1/1‑40 (MQ=255) tGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaa > 2:2193407‑M1/1‑38 (MQ=255) ggCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaag < 1:5614361‑M1/93‑57 (MQ=255) ggCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaag < 2:5790049‑M1/93‑57 (MQ=255) gCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaaga > 1:1176950‑M1/1‑36 (MQ=255) gCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaaga > 1:5233207‑M1/1‑36 (MQ=255) ccGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagat > 2:7654045‑M1/1‑35 (MQ=255) ccGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagat > 2:3335911‑M1/1‑35 (MQ=255) cGTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagata < 2:567321‑M1/93‑60 (MQ=255) gTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatat < 1:8300493‑M1/93‑61 (MQ=255) gTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatat < 1:1987224‑M1/93‑61 (MQ=255) gTGGACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatat > 1:6117057‑M1/1‑33 (MQ=255) ggACGTGGGTGGTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgc < 2:7053810‑M1/93‑63 (MQ=255) cGTGGGTGGTTTCCGCCTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaa < 2:4130100‑M1/93‑66 (MQ=255) gtgggtggTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaat < 2:2338934‑M1/93‑67 (MQ=255) tggttggtTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaata < 2:4275969‑M1/93‑68 (MQ=255) tgggtggTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaata < 1:8071056‑M1/93‑68 (MQ=255) gggtggTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatag < 2:4489319‑M1/93‑69 (MQ=255) gggtggTTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaagag < 2:1235409‑M1/93‑69 (MQ=255) tggtTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaac < 2:2795950‑M1/93‑72 (MQ=255) tggtTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaac < 2:2422414‑M1/93‑72 (MQ=255) ggtTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacg < 1:3210500‑M1/93‑73 (MQ=255) gtTTCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacgg < 1:7938708‑M1/93‑74 (MQ=255) tttCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggc < 2:29778‑M1/93‑75 (MQ=255) ttCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggca < 2:348354‑M1/93‑76 (MQ=255) tCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaa > 2:1708019‑M1/1‑17 (MQ=255) tCCGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaa < 2:4879792‑M1/93‑77 (MQ=255) ccGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaat < 1:6612726‑M1/93‑78 (MQ=255) cGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatt < 2:150766‑M1/93‑79 (MQ=255) cGACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatt > 1:8794642‑M1/1‑15 (MQ=255) cGACTCTTACCGCCAggcggttaaagcgttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatt > 2:5288865‑M1/1‑15 (MQ=255) gACTCTTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaattt > 2:1778555‑M1/1‑14 (MQ=255) cctcttACCGCCAggcggttaatgccttctataaaaccaccttcaagacggcaaataatcccgatgaagatatgcaaatagaacggcaattta < 2:6429596‑M1/92‑81 (MQ=255) ctctTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttat < 2:3648698‑M1/93‑82 (MQ=255) tctTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatt > 2:4034545‑M1/1‑11 (MQ=255) tctTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatt > 1:6413659‑M1/1‑11 (MQ=255) ctTACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttattt < 2:5041260‑M1/93‑84 (MQ=255) tACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttac < 1:989388‑M1/93‑86 (MQ=255) tACCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttac < 2:884547‑M1/93‑86 (MQ=255) tACCGCCAggcagttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttac < 1:1512058‑M1/93‑86 (MQ=255) aCCGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacg < 1:4723210‑M1/93‑87 (MQ=255) ccGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacga > 2:1389323‑M1/1‑6 (MQ=255) ccGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacga > 2:1648840‑M1/1‑6 (MQ=255) cGCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacgac < 1:7584336‑M1/93‑89 (MQ=255) gCCAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacgaca < 2:8653997‑M1/93‑90 (MQ=255) cAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacgacaat < 1:73606‑M1/93‑92 (MQ=255) cAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacgacaat > 2:6240830‑M1/1‑2 (MQ=255) cAggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacgacaat < 2:3540310‑M1/93‑92 (MQ=255) aggcggttaatgccttctataaaaccaccttcaagacggccaataatcccgatgaagatatgcaaatagaacggcaatttatttacgacaatc > 1:6936904‑M1/1‑1 (MQ=255) | AGAACAGCCGGAAGCCTTTGTTGCCGAACTCTTTGAACATATTGCTGATTATAGCTGGCCGTGGACGTGGGTGGTTTCCGACTCTTACCGCCACCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACA > NC_000913/3156164‑3156348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |