| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP025268 | 262,011 | Δ34,307 bp | ykfI–intF | 46 genes ykfI, yafW, ykfH, ykfG, yafX, ykfF, CXP41_RS01315, CXP41_RS01320, CXP41_RS01325, CXP41_RS01330, yafZ, ykfA, perR, CXP41_RS01355, CXP41_RS01360, CXP41_RS01365, ykfC, CXP41_RS01385, mmuP, mmuM, fbpC, CXP41_RS01405, CXP41_RS01410, CXP41_RS01410, CXP41_RS01420, CXP41_RS01425, yagB, CXP41_RS24560, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, CXP41_RS01470, CXP41_RS01480, CXP41_RS01480, CXP41_RS01490, yagK, yagL, CXP41_RS01505, ykgV, CXP41_RS01515, intF |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP025268 | 262011 | 296317 | 34307 | 711 [2] | [10] 721 | ykfI–intF | ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 262010 | 2 (0.000) | 411 (1.140) | 81/154 | 0.2 | 99.9% | intergenic (+11/+371) | CXP41_RS01280/ykfI | tRNA‑Thr/type IV toxin‑antitoxin system toxin YkfI |
| ? | NZ_CP025268 | 296318 = | 0 (0.000) | intergenic (‑170/+115) | intF/CXP41_RS01530 | integrase family protein/LysR substrate‑binding domain‑containing protein | |||||
Only 100 of 721 total aligned reads displayed.
AACTTGGTGTTTTATAATATAAAGTATGTTGTTTTGATTGATTGCTCAAGTAGTTAAAAATGCATTAACATCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCT > NZ_CP025268/296187‑296457 | accttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAccc < 2:4795668‑M2/9‑1 (MQ=255) ccttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAcccc > 2:9656582‑M2/131‑140 (MQ=255) ccttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAcccc > 2:5269205‑M2/131‑140 (MQ=255) cttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCa < 1:8815638‑M2/11‑1 (MQ=255) cttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCa < 1:3059889‑M2/11‑1 (MQ=255) agaccaccgtgattcacgttcgtgaacatgtcctttcagggccgagatagctcagttggtagagcagcgcattcgtaatgcgaatgtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCata < 2:8573531‑M2/13‑1 (MQ=255) gtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCatat > 1:9239867‑M2/127‑140 (MQ=255) gtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCatat > 1:9903412‑M2/127‑140 (MQ=255) gtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCatat > 1:4437590‑M2/127‑140 (MQ=255) ccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATAttt < 1:2612008‑M2/16‑1 (MQ=255) ccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTaaa < 1:9720198‑M2/19‑1 (MQ=255) gtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATa > 2:3819905‑M2/120‑140 (MQ=255) gtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATa > 1:8751665‑M2/120‑140 (MQ=255) attcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATacac < 2:2756998‑M2/24‑1 (MQ=255) attcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATacac > 2:2235219‑M2/117‑140 (MQ=255) attcacgttcgtgaacatgtcctttcagggccgatatagctcagtgggtagcgcagcgcattcgtactgcgaaggtcgtaggttcgactcctcttatcggcaccattaaaatcaaaGAGTTACCCCAtatttaaagccac < 2:926406‑M2/24‑6 (MQ=255) ttcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc < 1:10426432‑M2/25‑1 (MQ=255) cacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcaccac < 1:4264327‑M2/27‑1 (MQ=255) cgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTAACCCCATATTTAAATACACCACGt > 1:2874870‑M2/112‑140 (MQ=255) gttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGtt < 1:7479713‑M2/30‑1 (MQ=255) gttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGtt < 1:4845758‑M2/30‑1 (MQ=255) tcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTtc > 1:3582446‑M2/109‑140 (MQ=255) cgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTtcc > 1:2153122‑M2/108‑140 (MQ=255) gaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTtcctcc < 1:6860365‑M2/36‑1 (MQ=255) tacatgtcctttcagggcagatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatctgcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTcctcct < 2:6618207‑M2/37‑1 (MQ=255) acatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCtg < 1:611413‑M2/38‑1 (MQ=255) atgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCtgtg > 2:7804018‑M2/101‑140 (MQ=255) gtcctttcaggtccgatatagctcagttggtagatcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatctgcacctttaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc < 2:4098830‑M2/42‑1 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaatGAGTTACCCCATATTTATATACACCACGGTTCCTCCTGGGcc > 2:10166630‑M2/99‑140 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc < 2:9054784‑M2/42‑1 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc > 1:10179440‑M2/99‑140 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc < 1:6466151‑M2/42‑1 (MQ=255) tttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTAt < 2:6467798‑M2/46‑1 (MQ=255) ggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGc > 1:8451847‑M2/89‑140 (MQ=255) cgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCAt < 1:765800‑M2/55‑1 (MQ=255) atatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTg > 2:1853301‑M2/84‑140 (MQ=255) atatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTg > 2:6884399‑M2/84‑140 (MQ=255) atatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTg > 1:9484689‑M2/84‑140 (MQ=255) atatagctcagttagtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGATACCTCCTGTGCCGTATTTGTGCCAGTg > 1:5864696‑M2/84‑140 (MQ=255) tatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGt < 2:5528393‑M2/58‑1 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGc > 2:7466086‑M2/78‑118 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGc > 2:5986960‑M2/78‑118 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGc < 1:5986960‑M2/41‑1 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCt > 1:1665274‑M2/78‑140 (MQ=255) agttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaactcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTAgg > 2:10476256‑M2/75‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 1:1173043‑M2/73‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 2:3298708‑M2/73‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 1:7568751‑M2/73‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 1:230717‑M2/73‑140 (MQ=255) tggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCaa < 2:208725‑M2/69‑1 (MQ=255) tggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCaa < 1:1482004‑M2/69‑1 (MQ=255) gtagagcagcgcattcgtaatgcgaaggtcgtagggtcgactccgattatcggcaccattaaaatcaaaGAGGTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAAtt < 2:488449‑M2/71‑1 (MQ=255) agagcagcgcattcgtaatgcgcaggtcgtaggttcgactcctagtctcggcaccattaaaatccaaGAGGTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATGGTAACCTTGGCAATtca < 2:7070287‑M2/73‑1 (MQ=255) agagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtca < 1:1806125‑M2/73‑1 (MQ=255) gagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcat < 2:8020642‑M2/74‑1 (MQ=255) gagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcat > 2:8948007‑M2/67‑140 (MQ=255) gagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcat < 2:3476951‑M2/74‑1 (MQ=255) gcagcgcattcgtaatgcgaaggtcgtaggttctaatcctattatcggcaccattaaaatcaaaGATTGACCCCAGATTGAAATACACCACGTGTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcctca < 2:9465411‑M2/76‑1 (MQ=255) gcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcatca > 1:8974977‑M2/65‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcacctttaaaatcaaaGAGTTACCCAATATGTTAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTGACCTTGGCAATTCTTCATAAt > 2:7609172‑M2/61‑140 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa < 1:7209496‑M2/81‑1 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa < 2:2382413‑M2/81‑1 (MQ=255) cattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATAc > 1:10564973‑M2/59‑140 (MQ=255) cattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATAc > 1:5498332‑M2/59‑140 (MQ=255) cattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCAGATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATAc > 1:3945062‑M2/59‑140 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTGACCTTGGCAATTCATCAAAATACTGTTc > 2:4271709‑M2/54‑140 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 2:1596690‑M2/87‑1 (MQ=255) aatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTGTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTg < 2:621758‑M2/89‑1 (MQ=255) atgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGa > 2:4665252‑M2/51‑140 (MQ=255) gcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACa < 2:8405602‑M2/92‑1 (MQ=255) cgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACAt < 1:7372361‑M2/93‑1 (MQ=255) aaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTACCCTTGGCAATTCATCAAAATACTGTTCTGACATCa > 2:9810132‑M2/46‑140 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:3114586‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:10767092‑M2/97‑1 (MQ=255) gtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGc < 2:297915‑M2/98‑1 (MQ=255) gtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGc < 2:7302585‑M2/98‑1 (MQ=255) gtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgt > 1:10059211‑M2/40‑140 (MQ=255) taggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtg > 1:9994190‑M2/39‑140 (MQ=255) taggttcgactactattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtg < 1:4693107‑M2/102‑1 (MQ=255) cgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtg > 2:4524318‑M2/33‑140 (MQ=255) gactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtgc < 2:1175350‑M2/109‑1 (MQ=255) gactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtgc > 1:3798866‑M2/32‑140 (MQ=255) gACTCCTATTTTCGGCACCATTAAAATCAAAGAGTTCCACCATATTTAAATACCCCACGTTTCCTCCTGTGCCGTATTTGTGCCCGTGTAACCTTGGCAATTCATAAACATACTGTTCTGACTTCAGGCAgtgcaggtgc > 2:8149019/1‑140 (MQ=255) actcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtgca < 1:8130751‑M2/110‑1 (MQ=255) tattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAt > 2:1977744‑M2/26‑140 (MQ=255) attatcggcaccattaaaatcataGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAtt < 2:1416629‑M2/116‑1 (MQ=255) ttatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCCCGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAttt < 2:579875‑M2/117‑1 (MQ=255) cggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGc < 1:3340660‑M2/121‑1 (MQ=255) gcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCa > 1:5244077‑M2/18‑140 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCGGTGCAGGTGCAGACATTTAAGCCaa > 2:509574‑M2/17‑140 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCaa > 1:5009649‑M2/17‑140 (MQ=255) atcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTgccgc < 2:1035713‑M2/134‑1 (MQ=255) tcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTgccgcc < 1:7842148‑M2/135‑1 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc > 1:1331114‑M2/4‑90 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCAt > 2:2594329‑M2/4‑140 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCAt > 1:7051401‑M2/4‑140 (MQ=255) aaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCata > 1:10830392‑M2/3‑139 (MQ=255) aaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCAtt < 1:6660798‑M2/138‑1 (MQ=255) gagTTACCCCATATTTACATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCt < 1:3232194/140‑1 (MQ=255) gagTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCt < 2:10888403/140‑1 (MQ=255) | AACTTGGTGTTTTATAATATAAAGTATGTTGTTTTGATTGATTGCTCAAGTAGTTAAAAATGCATTAACATCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCT > NZ_CP025268/296187‑296457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |