| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM406671 | 495875 = | 109 (0.100) | 18 (0.020) +ATATCACAAAAAAT |
17/268 | 24.6 | 2.8% | intergenic (+75/‑34) | llmg_0504/nifZ | putative membrane protein/pyridoxal‑phosphate dependent aminotransferase |
| ? | AM406671 | = 2450963 | 1260 (1.140) | intergenic (+48/+63) | tnp905/ywjF | transposase for insertion sequence element IS905N/Putative 3‑hydroxyisobutyrate dehydrogenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM406671/495998‑495875‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTTATGGATGCGTTGACTTTGCTTGAAATTATA < AM406671/2450963‑2450838 |||||||||||||| GTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTAAATCACAAAAAATGATACTGTCAA < 2:5110497/149‑1 CCCATAATTTTTGTTGCTACATATGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTAAATAAAAAAAAATGATACTGTCAATAAT < 2:1092321/149‑1 TGTTTCTACATCTATATAAGTTCAAAAAACCATTGGATTAAATGACGTAGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAAC < 2:7199668/149‑1 ACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAG < 2:2661997/149‑1 tgaataAACTGCCGTAATAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTAATAATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATA < 2:8168684/143‑1 TAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATAACACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTT < 2:2395716/149‑1 aTGCCGTCGTAACAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATAATATAACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCA < 2:6692233/148‑1 TCGTAACAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTG < 2:1313590/149‑1 CAGAATTATCAAAAAATATCATTGTTTATACTTAATATTTAAAAATCAATCTTATTATAACACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCA < 2:2126903/149‑1 TATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAATATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGG < 2:4456704/149‑1 TATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTT < 2:7529124/149‑1 ATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTT < 2:8217471/149‑1 TCATATTTTATCATTAATATTTAAAAAACAATCTTATAAAATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTTA < 2:6126254/149‑1 TTATCCTTAATATATCAAAATCAATCTTATAATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTTATGGATGC < 2:2653768/149‑1 CCTTAATAGTTAAAAATCAACCTTATTATAACACAATAAATGATACTGACAATAATTATGTGTAAAAACACAAGTAGAGTTGAAGAATATTAAACAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAAACATTTATGGATTAGTTG > 2:3724531/1‑149 AATATTTAAAAATCAATCTTATTATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTTATGGATGCGTTGACTT < 1:6834127/149‑1 AATATTTAAAAATCAATCTTATAATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTTATGGATGCGTTGACTT < 2:339992/149‑1 AATCTTATTATATCACAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTTATGGATGCGTTGACTTTGCTTGAAATTATA < 2:3596697/149‑1 |||||||||||||| GTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM406671/495998‑495875‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGCTTTCAAGTGTGTCAGCACATTGGCCAAACCCTTTATGGATGCGTTGACTTTGCTTGAAATTATA < AM406671/2450963‑2450838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |