New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM406671	704944 =	NA (NA)	1261 (0.960)	218/296	2.2	NA	coding (127/261 nt)	llmg_0720	conserved hypothetical protein
	?	AM406671	= 796737	NA (NA)					intergenic (+88/‑293)	llmg_0823/ps333	putative transposase helper protein for IS712D/terminase small subunit

AAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGCTGCGGA  >  AM406671/704837‑705088                                                                                                            |                                                                                                                                                 aataaTTTAAAGAAGCCCTTATCGCATTTTATAATTCTGGTAAATCCGTCTCCCGGCTGTCTAAAGAATACGACGTCGCACCTGCAACAATTTATAAATGGATAGACCTCTGCTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGag                                                                                                         <  2:397114/146‑2 (MQ=1)     atgtAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTc                                                                                                     <  2:8466024/146‑1 (MQ=1)                    tagcgcgTTCTATCATTCTGGTCAAGCCGTCACCCAGCGGTCTAACGCAGACGGCGTGGCCCCTGCAACAATTGATAGATGGATAGACCTCTACTCTGAATCTAAGGAAAGCTGAGCCTCTACAGCTGATTGTCTGGAATTAAAAAGag                                                                                      <  2:1672126/146‑2 (MQ=1)                             ctgtCATTCGGGTCAGTACGTCCCCCTGCTGTCTAAAGAAGACGACGTGGCCCCTGCAACAATTTATAAGTGCATAGACGGCTGCTCTAAATCTAATGAAAGCTCCGTCTCTAAACCTGATTGTCTAGAATTAAAAAGACAGCTGGCTa                                                                             <  2:1487422/146‑1 (MQ=1)                              taccATTCTGGTCAAACCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTAGAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTaa                                                                            <  2:10609184/146‑1 (MQ=0)                                                 tcgcccAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGGGAc                                                         <  2:11044082/146‑1 (MQ=1)                                                    ccaaGCTGTCTAAAGAATAAGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATAAAAAAGACAACTTGCTAAAGTTAAGGAAGAACGAGCCATc                                                      >  2:5735638/4‑149 (MQ=1)                                                        gcagTCTAAAGAATACGACGTCGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAAGCTAATGAAAGCTCCGTCTCTAAAGCTAATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTaa                                                  <  1:5408134/146‑1 (MQ=0)                                                                          cggggCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCatat                                <  1:3308812/146‑1 (MQ=1)                                                                          cgcggCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCatat                                <  1:8741993/146‑1 (MQ=1)                                                                          cgaggCCCCTGCAACAATTTATAAAAGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTACAAGAATAAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCatat                                <  2:6345145/146‑1 (MQ=1)                                                                           gtgtcaccTGCAACAAATTATAAATGGATAAAAATCTACTCTAAAACTTATGAAAGCCCCGTCTCTAAAGATGATAATTTAGAATAAAAAAGACAACTTGCTAAACTCAACTAAGACCGATAAATCTTAAAAAAAGTATTGACCATAtt                               <  2:8320359/143‑1 (MQ=0)                                                                                          atatataAATGGATAGACCTCTACTCTAAAAATAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAAAAAAAAAAAAAAAAGTATTGACCATATTCGCCGAGAAAaagaa                <  2:8324825/146‑1 (MQ=1)                                                                                          atatataAATGGATAGACCTCTACTCTAAAAATAATGAAAGCTCAGTCTCTAAAGCTGATTTTCTAGAAATAAAAAGACAAATGGCTAAAGTTAAGGAAGAACGAAAAAAAAAAAAAAAAGTATTGACCATATTCGCCGAGAAAaagaa                <  2:10242447/146‑1 (MQ=1)                                                                                             tagaaaTGGAGAGACCTCAACTATAAATCTAATGAAAGCTCAGGCTCTAAAGCGGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAagtg             <  2:8821970/146‑1 (MQ=1)                                                                                             taaaaaTGGATAGACCTCTACGCTAAATCAAATGAAAGCACCGACTCTAAAGCAGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGAAAACTTAAAAAAAGTATTGACCATAAAAAACGAGAAAAAGAagtg             <  2:7738017/146‑1 (MQ=1)                                                                                                    ggttAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGtgctg      <  2:1005716/146‑1 (MQ=1)                                                                                                    gggtAGACCTCTGCTCTAAATCTACTGAAAGCTCCGTCTCTAATGCTGATTTTCTAGAATTAAAAAGACATCTGTCGAAAGTTAAGGAAGAACGAAACATATTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGttctg      <  2:7516430/146‑1 (MQ=1)                                                                                                       taaaCCTCTACTCTAAATCTAAAGAAAGAACCGTATCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAAAAAGAAACATCTTAAAAAAAGTATTGACAAAAAAAAAAAAAAAAAAGAAGTGAGTGCTGCgg   <  2:9040277/146‑1 (MQ=1)                                                                                                       taaaCCTATACTCTAAATCTAAAGAAAGCTCCGTCTCTAAAGCTGAATTTCTAGAATTAAAAAAACAACTGGCTAAAGTTAAGGAAAAACGAGACTTCTTAAACAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGCTGCgg   <  2:8276985/146‑1 (MQ=1)                                                                                                        aggccTCTACTCTAAATCTAATGAAAGCTCCGGCTCTAAAGCTGATTTTCTAGAATTAAAAAAACAACTTGCTGAAGTCACGGAAGAACGAGACAACATAAAAAAAGAATTGACAATACTCGCCGAGAAAAAGAAGACAGCGCAGCGGa  >  2:9861242/4‑149 (MQ=1)                                                                                                            |                                                                                                                                                 AAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGCTGCGGA  >  AM406671/704837‑705088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.