New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	312594 =	234 (1.490)	77 (0.490)	10/150	10.4	21.0%	intergenic (+202/‑220)	yahG/yahI	hypothetical protein/predicted carbamate kinase‑like protein
	?	REL606	= 2583282	345 (2.190)					coding (741/741 nt)	yfhQ	predicted methyltransferase
Rejected: Coverage evenness skew score above cutoff.

CGTAGGCCGGATAAGGCGTCCACGCCGCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/312626‑312594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGC  <  REL606/2583282‑2583208                                                                                                              cgaAGGCCGGTTAAGGCGTTCCGGCCCCGTCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCC                                  <  2:4597803/73‑1  gtgGGCCGAATAAGGCGTCCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCT                                 <  2:2881259/73‑1  GTAGTCCGGAAAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCT                                 <  1:3581892/76‑1  GTAGGTCGGTGAAGGCGTCCACGCCACGTCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCT                                 <  2:4559569/76‑1  GTAGGCCGAATAGGGCGTCCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCT                                 <  1:4685601/76‑1   tgGGCGGGATGTGGCGTCCGCGCCCCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTA                                <  2:3322492/74‑1   ggGGCCGGATAAGCCTTCCCCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTA                                <  2:4716863/74‑1   gAGGTCGGATAAGCGGTCCCCGCCACATCCCACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTA                                <  2:969906/75‑1   TAGGTCGGATAAGGCGTCCACGCCGCACCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTA                                <  2:3182575/76‑1     gtCCGGAAAGGGCGTCCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACA                              <  1:4218088/74‑1     ggtCGGAAAAGGCTTCCCCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACA                              <  2:2178172/73‑1     GGCGGGATAGGGCTTCCAGGCCGCACCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACA                              <  2:2695794/76‑1      GCCGAATAAGCCGTCCCCCCCCCACCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAG                             <  2:4156305/76‑1       ggGGATAAGGCTTCCCCGCCCCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGT                            <  1:3020905/74‑1        gGGATAAGGCGTCCAGGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG                           <  2:3782342/75‑1        CGGATAAGGCGTACCCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTG                           <  1:2837704/76‑1         GGAAAAGGCGTCCCGCCCCCCTCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGA                          <  2:5158696/76‑1          gaaAAGCCGCCCACGCCGCATCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAA                         <  1:530551/73‑1            aAAGGGGTCCCCGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGTACA                       <  2:3186784/75‑1            aAAGGCTTCCCCGCCGCACCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACA                       <  1:901118/75‑1              AGGCGTCCCCGCCCCACCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGA                     <  2:901714/76‑1               GGCTTCCACGCCCCACCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAA                    <  2:1086503/76‑1               GGCGTCCCCGCCCCCACCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGTACAGAA                    <  2:1653506/76‑1               GGCGCCCCCGCCGCAGCGGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAA                    <  2:5068937/76‑1                   TCCCCGCCCCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGT                <  2:4733669/76‑1                   TCCACGCCCCATCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGT                <  2:3290291/76‑1                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG              >  2:5109430/1‑76                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG              >  2:3178495/1‑76                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG              >  2:1568248/1‑76                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG              >  2:5022408/1‑76                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACA                              >  1:830946/1‑60                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACA                              <  2:830946/60‑1                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATG                                                >  1:2487104/1‑42                     CACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATG                                                <  2:2487104/42‑1                     CACGCCCCACCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG              <  1:10942/76‑1                     CACGCCCAATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAG              <  2:3993479/76‑1                       CGCCGCATCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGT            <  2:762104/76‑1                       CGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGT            >  2:2763464/1‑76                       CGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCCTAGGg            >  2:4379741/1‑75                       CGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTT                                          >  1:3365685/1‑46                       CGCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTT                                          <  2:3365685/46‑1                        GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGgc           >  2:2111226/1‑74                        GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTg           >  2:4316993/1‑75                        GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTC           >  2:71035/1‑76                        GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTC           >  2:1604045/1‑76                        GCCGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGCAGGTC           >  2:5151038/1‑76                          CGCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGCAGGGCGG         >  2:1687810/1‑76                           GCATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGA        >  1:815540/1‑76                            cacCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGAT       <  2:2821242/73‑1                            cacCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGAT       <  1:4113261/73‑1                            CATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGAa       >  2:1362310/1‑75                             cTCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATA      <  2:2571292/75‑1                             ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATA      >  2:3684565/1‑76                             ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATA      <  1:4141986/76‑1                             ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATA      >  2:1237205/1‑76                             ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATA      >  2:373670/1‑76                             ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATA      >  2:580591/1‑76                             ATCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCCTAGGTCGGATA      >  2:255034/1‑76                              cCCGCCAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAA     <  1:266586/75‑1                              TCCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAA     <  1:2373137/76‑1                               cgGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG    <  1:1894715/74‑1                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG    >  2:4613890/1‑76                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG    >  2:4659935/1‑76                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG    >  2:4244630/1‑76                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG    >  2:5048768/1‑76                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG    >  2:3356001/1‑76                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAG    <  1:671068/76‑1                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATAAG    >  2:1062468/1‑76                               CCGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATAAG    >  2:3507518/1‑76                                CGACAGCCGTTGCCTGATGCGACGCGTGATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGG   <  1:4056116/76‑1                                CGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGG   >  2:5066639/1‑76                                CGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGG   >  2:3761036/1‑76                                CGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGG   >  2:1968187/1‑76                                CGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATAAGG   >  2:1824800/1‑76                                CGACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGCAGGTCGGATAAGG   >  2:1676339/1‑76                                 GACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGC  >  2:2823596/1‑76                                 GACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTAC                               <  1:3566921/47‑1                                                                                                              CGTAGGCCGGATAAGGCGTCCACGCCGCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/312626‑312594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACAGCCGTTGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGC  <  REL606/2583282‑2583208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.