| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 880528 = | 240 (1.260) | 6 (0.040) | 6/122 | 15.7 | 3.4% | intergenic (+17/+163) | ybjK/ECB_00814 | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein |
| ? | REL606 | = 904682 | 149 (0.960) | intergenic (+77/+159) | ECB_00851/ybjL | protein similar to prophage P2 OGR protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/880616‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGGCAG < REL606/904682‑904608 ATAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA < 2:73758/76‑1ATAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA < 2:649113/76‑1ATAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA < 2:469813/76‑1 TAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 1:3963783/76‑1 TAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 1:4409219/76‑1 TAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAAT < 1:3090838/76‑1 AACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATG < 1:1391690/76‑1 CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG > 2:1216313/1‑76 CCACCACTGACCACCAACCCAACTTATTGCTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG < 1:2890155/76‑1 CCACCACTGACCACCAACACAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG < 2:1578649/76‑1 CACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGT > 1:2072051/1‑76 ACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTT > 2:4284791/1‑76 ACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTT > 1:1045899/1‑76 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT > 2:2301876/1‑76 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT < 2:516262/76‑1 CACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT < 2:5073001/76‑1 CACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT < 1:3100987/76‑1 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT > 2:3297453/1‑76 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT > 2:6039457/1‑76 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTT > 1:1542051/1‑76 CTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT < 1:5164906/76‑1 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG > 2:135943/1‑76 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTat > 2:5178036/1‑74 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT > 1:5846704/1‑76 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT > 1:5594472/1‑76 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT < 2:3393284/76‑1 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT < 2:1105320/76‑1 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT > 1:4366382/1‑76 ACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT > 1:3478473/1‑76 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGC > 1:266138/1‑76 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCC < 2:5736615/76‑1 CTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTAT < 2:5583550/76‑1 ATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTA > 1:399369/1‑76 TCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCAC > 1:2666306/1‑76 ACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGAT < 2:4828267/76‑1 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC < 2:5494356/76‑1 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC < 1:5981717/76‑1 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC < 2:1066267/76‑1 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC > 2:4429718/1‑76 TGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA < 2:2950921/76‑1 TGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA > 2:578487/1‑76 GGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 1:3448672/76‑1 GGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 1:1973011/76‑1 GGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 1:2615192/76‑1 GGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 1:1908169/76‑1 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA > 2:3104875/1‑76 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA < 1:2374212/76‑1 GGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA < 1:4906238/76‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA < 1:2662484/76‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA > 2:900323/1‑76 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA > 1:3057108/1‑76 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT > 1:3837514/1‑76 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT > 1:5759462/1‑76 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGCTTTTTAACGATGGCGACAAAAT < 2:2098114/76‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 1:1522118/1‑76 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 1:4337112/76‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 1:237930/1‑76 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 1:1998806/1‑76 TTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG > 1:307460/1‑76 TTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG > 1:4832863/1‑76 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC < 2:3485486/76‑1 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC < 1:569253/76‑1 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC > 2:3400315/1‑76 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG > 1:2937252/1‑76 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGG > 2:5330105/1‑76 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGG > 1:1032830/1‑76 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGG < 2:5892445/76‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGG < 1:3622081/76‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGG > 2:3438742/1‑76 gTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGGCA < 2:309626/75‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGGCcg > 1:3168585/1‑74 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGGCAG < 1:6286259/76‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGGCAG < 2:4475014/76‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGGCAG < 2:791253/76‑1 ATAACCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/880616‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCGGCAG < REL606/904682‑904608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |