| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 4,375,781 | (TGGCGC)3→2 | coding (215‑220/1848 nt) | mutL → | DNA mismatch repair protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4375773 = | 3 (0.020) | 97 (0.630) | 60/122 | 1.5 | 97.3% | coding (207/1848 nt) | mutL | DNA mismatch repair protein |
| ? | REL606 | = 4375766 | 3 (0.020) | coding (200/1848 nt) | mutL | DNA mismatch repair protein | |||||
Only 100 of 151 total aligned reads displayed.
GCGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4375861‑4375773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcgccagcTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG < REL606/4375766‑4375692 CGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGC < 1:1049929/76‑1 CGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGC > 2:1794173/1‑76 GCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCG < 1:3515518/76‑1 CTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGCGGCGATTTTTCTGGTGGGATGGCGCGCC > 1:3215300/1‑76 TCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCA < 1:504567/76‑1 TCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCA < 1:4880295/76‑1 CACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGGTTTTACTGGTGGGATGACGCGCCAG > 1:321593/1‑76 CACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGGCAG > 1:4926790/1‑76 CACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCcg > 1:1753469/1‑74 ACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGC < 2:26063/76‑1 GCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCC < 2:1890712/76‑1 GCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCC < 1:4724017/76‑1 GCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCC < 1:360481/76‑1 CGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGGCAGCGCCc > 1:1193036/1‑75 CGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCA < 1:5725752/76‑1 GAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAG < 1:2252710/76‑1 GAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAG < 1:1392024/76‑1 AAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGC < 1:608216/76‑1 AAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCT > 1:4224639/1‑76 AGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGGATGACCCGCCCGCGCCAGCTC > 2:5662501/1‑76 CCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTC < 1:5432397/76‑1 CAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGGATGACGCGCCAGCGCCAGCTCGTCT > 1:4551020/1‑76 CTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTT > 1:2071981/1‑76 TGATAATGGCTTCGGGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT > 1:2535789/1‑76 TGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT > 1:2695822/1‑76 TGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT < 2:1626227/76‑1 TGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT > 1:3783335/1‑76 GATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTG < 2:1402452/76‑1 GATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTG < 1:1876065/76‑1 ATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCCGCGCCCGCTCGTCTTTTTTGA > 1:5754704/1‑76 TAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCCTGACGCGCCAGCGCCCGCTCGTCTTTTTTttt > 2:1001697/1‑73 TAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGAT < 1:4671720/76‑1 AATTGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 1:6225424/76‑1 AATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 1:5831346/76‑1 AATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 2:5246217/76‑1 AATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 2:4629551/76‑1 GGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATTCCG > 2:4585638/1‑76 CTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCCCA > 2:5268052/1‑76 TTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCCTGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAG > 2:1002395/1‑76 TTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAG < 1:6156024/76‑1 TTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAG > 1:3142906/1‑76 CGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACCCGCCAGCGCCAGCTCGCCTTTTTTGATACCGCAGgc > 2:2515823/1‑74 GAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCG < 1:2113606/76‑1 GAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCG > 2:796580/1‑76 TCGTCCAGAGAGGCGATTTTCCTGGTGGCATGCCGCCCGCGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTAT < 2:4468458/76‑1 GTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTTTTTTTTGATACCGCAGCCGTTATta > 1:6059810/1‑74 TCCAGAGAGGCGATTTTACTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATCCCGCAGCCGTTATCAC < 1:3785286/76‑1 CAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGA > 1:800484/1‑76 AGAGAGGCGATTTTACTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAA < 1:1366147/76‑1 AGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATTACGAA > 2:940412/1‑76 AGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAA > 1:3483140/1‑76 AGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAA > 1:4318796/1‑76 AGAGGCGATTTTACTGGTGGCAAGACCCGCCAGCTCCAGGTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATG > 2:1553323/1‑76 GAGGCGATTTTACTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGC < 1:3072543/76‑1 GGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAAAGCGG > 2:5565421/1‑76 CGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGGTATCACGAATGCGGAT > 2:623438/1‑76 CGATTTGACGGGTGGCGTGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGAT < 1:5222912/76‑1 GATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATA > 1:5537680/1‑76 ATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAA < 1:6276513/76‑1 TTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAG > 1:4461549/1‑76 TTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGGCTTTTTTGATACCGCAGCCGCTATCACGAATGCGGATAAG > 2:2927548/1‑76 TTTAACGGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAG < 1:611331/76‑1 TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATTCGGATAAGT > 1:426412/1‑76 TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGT > 1:2632604/1‑76 TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGT > 1:2212342/1‑76 TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGGTATCACGAATGCGGATAAGT > 2:2213521/1‑76 ACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTC < 2:5316138/76‑1 cgGGTGGCATGCCCCGCCAGCCCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCG < 2:4608274/74‑1 CTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCG < 1:1182583/76‑1 TGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGC > 1:6021012/1‑76 TGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGC < 1:5409096/76‑1 GGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGGTTCGCC > 1:3394534/1‑76 TGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCC > 2:5359485/1‑76 ATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCG > 2:337978/1‑76 ATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGGTTCGCCCCACCG > 2:5605868/1‑76 gcCGCCCCTGCGCCAGCTTGTCTTTTTTGCCACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCG < 1:3953394/74‑1 GACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCG > 1:1013690/1‑76 CGCCCCAGCGCCAGCTCGTCTTTTTTGATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTT < 1:2813136/76‑1 GCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTC > 2:768940/1‑76 GCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGA > 2:28626/1‑76 GCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGA > 1:1516915/1‑76 GCGCCGGCTCGTCTTTTTTGATACCCCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATC < 2:3949773/76‑1 GCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATC > 2:257821/1‑76 ccCCATCTCGTCTTTTTTGACACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCA < 2:3361439/74‑1 CGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCA > 2:3641170/1‑76 CGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCA < 1:5339558/76‑1 CAGCTCGTCTTTTTTGATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA < 1:435232/76‑1 CAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA > 1:2573958/1‑76 CAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA > 2:5023499/1‑76 CAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA > 2:5004095/1‑76 cGCTCGTTTTTTTTGTTACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:5409711/75‑1 acCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:5211382/74‑1 AGCTCGTTTTTTTTCATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:277210/76‑1 AGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 2:3142906/76‑1 AGCTCGTCTTTTTGGAGCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:6097521/76‑1 CTCTTCTTTTTTGATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG < 1:5876333/76‑1 CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 1:3960811/1‑76 CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 1:1455470/1‑76 CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 2:2786039/1‑76 CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 2:1312201/1‑76 GCGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4375861‑4375773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcgccagcTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG < REL606/4375766‑4375692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |