| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 4,375,781 | (TGGCGC)3→2 | coding (215‑220/1848 nt) | mutL → | DNA mismatch repair protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4375773 = | 3 (0.020) | 97 (0.630) | 60/122 | 1.5 | 97.3% | coding (207/1848 nt) | mutL | DNA mismatch repair protein |
| ? | REL606 | = 4375766 | 3 (0.020) | coding (200/1848 nt) | mutL | DNA mismatch repair protein | |||||
Only 100 of 130 total aligned reads displayed.
TCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAGCTGGCGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCT > REL606/4375691‑4375841 | cGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAg > 2:1312201‑M2/1‑75 (MQ=255) cGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAg > 1:3960811‑M2/1‑75 (MQ=255) cGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAg > 1:1455470‑M2/1‑75 (MQ=255) cGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAg > 2:2786039‑M2/1‑75 (MQ=255) cGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGATCAAAAAAGAAGAg < 1:5876333‑M2/76‑2 (MQ=255) atatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAggt < 1:5211382‑M2/76‑4 (MQ=255) atatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgct < 2:3142906‑M2/76‑4 (MQ=255) atatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgct > 1:5416669‑M2/1‑73 (MQ=255) atatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTAACAAAAAAAACGAgcg < 1:5409711‑M2/76‑4 (MQ=255) atatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGCTCCAAAAAGACGAgct < 1:6097521‑M2/76‑4 (MQ=255) atatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGATGAAAAAAAACGAgct < 1:277210‑M2/76‑4 (MQ=255) atatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGCATCAAAAAAAAAGAgct < 2:4823869‑M2/76‑4 (MQ=255) tatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctg > 2:5004095‑M2/1‑72 (MQ=255) tatTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGATCCAAAAAGAAGAgctg < 1:4362214‑M2/76‑5 (MQ=255) tGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcg < 1:5339558‑M2/76‑8 (MQ=255) tGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcg > 2:3641170‑M2/1‑69 (MQ=255) gATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgc > 2:257821‑M2/1‑68 (MQ=255) atatCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgct > 1:5743352‑M2/1‑67 (MQ=255) atatCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGATCAAAAAAGACGAgctggcgct < 1:6123187‑M2/76‑10 (MQ=255) tCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggc > 2:28626‑M2/1‑64 (MQ=255) tCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggc > 1:1516915‑M2/1‑64 (MQ=255) tCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggc > 2:5564798‑M2/1‑64 (MQ=255) aaCGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGATCAAAAAAGACGAgctggcgctggggcg < 1:2813136‑M2/76‑16 (MQ=255) cgcgGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTGGCAAAAAAGACAAgctggcgcaggggcggc < 1:3953394‑M2/76‑18 (MQ=255) cgcgGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtc > 1:1013690‑M2/1‑59 (MQ=255) gcgGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGATCAAAAAAAACGAgctggggctggcgcggca < 2:2212342‑M2/76‑19 (MQ=255) cgGTGGGGCGAACCTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcat > 2:5605868‑M2/1‑57 (MQ=255) cgGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcat > 2:337978‑M2/1‑57 (MQ=255) tGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgcc > 2:4362214‑M2/1‑54 (MQ=255) ggggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgcca > 2:3397809‑M2/1‑53 (MQ=255) gggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGGATCAAAAAAGACGAgctggcgctggcgcggcatgccac < 1:625603‑M2/76‑25 (MQ=255) ggCGAACCTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccacc > 1:3394534‑M2/1‑51 (MQ=255) ggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccacc > 1:3697076‑M2/1‑51 (MQ=255) gCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccccca < 1:2183967‑M2/76‑27 (MQ=255) gCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccacca > 1:6021012‑M2/1‑50 (MQ=255) cGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcggcatgccaccag < 1:1182583‑M2/76‑28 (MQ=255) gAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagt < 2:5316138‑M2/76‑29 (MQ=255) aaCTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaa > 1:1058027‑M2/1‑46 (MQ=255) aCTTATCCGCATTCGTGATACCGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaa > 2:2213521‑M2/1‑45 (MQ=255) aCTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaa > 1:5356237‑M2/1‑45 (MQ=255) aCTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaa > 1:2212342‑M2/1‑45 (MQ=255) aCTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaa > 1:2632604‑M2/1‑45 (MQ=255) aCTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaa > 1:2854476‑M2/1‑45 (MQ=255) aCTTATCCGAATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaa > 1:426412‑M2/1‑45 (MQ=255) cTTATCCGCATTCGTGATAGCGGCTGCGGTATCAAAAAAGCCGAgctggcgctggcgcgtcatgccaccagtaaaa > 2:2927548‑M2/1‑44 (MQ=255) cTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaa > 1:4461549‑M2/1‑44 (MQ=255) cTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcggcatgccacccgttaaa < 1:611331‑M2/76‑33 (MQ=255) ttATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaat < 1:6276513‑M2/76‑34 (MQ=255) tATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggggctggggcgtcctgccacccgtcaaatc < 1:4585676‑M2/76‑35 (MQ=255) aTCCGCATTCGTGATACCGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcg > 2:623438‑M2/1‑41 (MQ=255) aTCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccacccgtaaaaaag < 2:812482‑M2/76‑36 (MQ=255) aTCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcggcacgccacccgtcaaatcg < 1:5222912‑M2/76‑36 (MQ=255) ccGCTTTCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcc > 2:5565421‑M2/1‑39 (MQ=255) gCATTCGTGATAACGGCTGCGGTATCAAAAAAGGCGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctc > 1:6051878‑M2/1‑37 (MQ=255) cATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAcctggagctggcgggtcttgccaccagtaaaatcgcctct > 2:1553323‑M2/1‑36 (MQ=255) cATTCGTGATAACGGCTGCGGGATCAAAAAAAACGAGCTGGCGCTG‑‑‑‑‑GG‑GCGTCATGCCACCAGTAAAAATGCctcc > 1:4366606/1‑75 (MQ=255) ttCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggggcggcatgccaccaggaaaaacgcctctct < 1:2360722‑M2/76‑43 (MQ=255) ttCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctct > 1:322116‑M2/1‑34 (MQ=255) ttCGTGATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctct > 1:4318796‑M2/1‑34 (MQ=255) ttCGTGATAACGGCTGCGGTAAAAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctct > 2:3203583‑M2/1‑34 (MQ=255) ttCGTAATAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctct > 2:940412‑M2/1‑34 (MQ=255) cGTGATAACGGCTGGGGGATCAAAAAAAACGAGCTGGCGCTGGCGC‑GG‑‑‑‑‑CACGCCCCCAGTAAAATCGCctctctcg > 2:5457162/1‑74 (MQ=255) gTGATAACGGCTGGGGTATCAAAAAAGACGAGCTG‑‑‑‑‑GG‑GCTGGGGCGTCATGCCACCCGTAAAAACGCCCCTCTggg > 2:6064896/1‑75 (MQ=255) aTAACGGCTGCGGTATCAAAAAAGACGAgctggcgcgcgggcggcatgccaccaggaaaatcgcctctctggacga < 2:4468458‑M2/76‑49 (MQ=255) tAACGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgat > 1:3848696‑M2/1‑27 (MQ=255) aaCGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcctgccaccagcaaaatagcctctcttgacgatc < 1:94455‑M2/76‑51 (MQ=255) aCGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatct > 1:5538107‑M2/1‑25 (MQ=255) cGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctc > 1:1349805‑M2/1‑24 (MQ=255) cGGCTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctc > 2:796580‑M2/1‑24 (MQ=255) cTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaa > 1:3142906‑M2/1‑21 (MQ=255) cTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaa < 2:2780014‑M2/76‑56 (MQ=255) cTGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcaggccaccagtaaaatcgcctctctggacgatctcgaa > 2:1002395‑M2/1‑21 (MQ=255) tGGGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaag > 2:5268052‑M2/1‑20 (MQ=255) tGCGGTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaag < 1:1418678‑M2/76‑57 (MQ=255) cGGAATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagcc > 2:4585638‑M2/1‑18 (MQ=255) gttatCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagcca > 1:4803270‑M2/3‑17 (MQ=255) gTATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccat < 1:3485811‑M2/76‑61 (MQ=255) tATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccatt < 2:5246217‑M2/76‑62 (MQ=255) tATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccatt < 2:4629551‑M2/76‑62 (MQ=255) tATCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagcaatt < 1:6225424‑M2/76‑62 (MQ=255) aaaaaaaaagacGAgcgggcgctggcgcgtcaggccaccagtaaaatcgcctctctggacgatctcgaagccatta > 2:1001697‑M2/4‑14 (MQ=255) aaaaaaaaagacGAgcgggcgcgggcgcgtcatcccaccagtaaaatcgcctctctggacgatctcgaagccatta > 2:163453‑M2/4‑14 (MQ=255) aTCAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccatta < 1:4671720‑M2/76‑63 (MQ=255) tCAAAAAAGACGAgcgggcgcgggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattat > 1:5754704‑M2/1‑13 (MQ=255) aaaaaaaggcCGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattat > 1:3193404‑M2/3‑13 (MQ=255) cAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatc < 2:1402452‑M2/76‑65 (MQ=255) cAAAAAAGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatc < 1:1876065‑M2/76‑65 (MQ=255) aaaaaaGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatca > 1:3783335‑M2/1‑11 (MQ=255) aaaaaaGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatca > 1:2695822‑M2/1‑11 (MQ=255) aaaaaaGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatcccgaagccattatca > 1:2535789‑M2/1‑11 (MQ=255) aaaaaGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatcag > 1:2071981‑M2/1‑10 (MQ=255) aaaaGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatcagc < 1:5857849‑M2/76‑68 (MQ=255) aaaaGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatatcgaagccattatcagc < 1:2607093‑M2/76‑68 (MQ=255) aaaGACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatcagcc < 2:4597179‑M2/76‑69 (MQ=255) aaGACGGgcgggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatcagcct > 1:427673‑M2/1‑7 (MQ=255) gACGGgcgggccctggcgcgtcatcccaccagtaaaatcgcctctctggacgatctcgaagccattatcagcctgg > 2:151940‑M2/1‑5 (MQ=255) gACGAgctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatcagcctgg < 1:5432397‑M2/76‑72 (MQ=255) gAgctggcgcgggcgggtcatcccaccagtaaaatcgcctctctggacgatctcgaagccattatcagcctgggct > 2:5662501‑M2/1‑2 (MQ=255) agctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatcagcctgggctt < 1:2066109‑M2/76‑76 (MQ=255) agctggcgctggcgcgtcatgccaccagtaaaatcgcctctctggacgatctcgaagccattatcagcctgggctt > 1:4224639‑M2/1‑1 (MQ=255) | TCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAGCTGGCGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCT > REL606/4375691‑4375841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |