| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 4,375,781 | (TGGCGC)3→2 | coding (215‑220/1848 nt) | mutL → | DNA mismatch repair protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4375773 = | 3 (0.020) | 97 (0.630) | 60/122 | 1.5 | 97.3% | coding (207/1848 nt) | mutL | DNA mismatch repair protein |
| ? | REL606 | = 4375766 | 3 (0.020) | coding (200/1848 nt) | mutL | DNA mismatch repair protein | |||||
Only 100 of 131 total aligned reads displayed.
TGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAGCTGGCGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTT > REL606/4375698‑4375848 | cgatattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgag > 2:1312201‑M1/76‑76 (MQ=255)cgatattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgag > 1:1455470‑M1/76‑76 (MQ=255)cgatattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgag > 1:3960811‑M1/76‑76 (MQ=255)cgatattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgag > 2:2786039‑M1/76‑76 (MQ=255)cgatattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcgggatcaaaaaagaagag < 1:5876333‑M1/1‑1 (MQ=255) atattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaggt < 1:5211382‑M1/3‑3 (MQ=255) atattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagct < 2:3142906‑M1/3‑1 (MQ=255) atattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagct > 1:5416669‑M1/74‑76 (MQ=255) atattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtaacaaaaaaaacgagcg < 1:5409711‑M1/3‑2 (MQ=255) atattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcgggctccaaaaagacgagct < 1:6097521‑M1/3‑1 (MQ=255) atattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcgggatgaaaaaaaacgagct < 1:277210‑M1/3‑1 (MQ=255) atattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggcatcaaaaaaaaagagct < 2:4823869‑M1/3‑1 (MQ=255) tattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctg > 2:5023499‑M1/73‑76 (MQ=255) tattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctg > 2:5004095‑M1/73‑76 (MQ=255) tattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctg > 1:2573958‑M1/73‑76 (MQ=255) tattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcgggatccaaaaagaagagctg < 1:4362214‑M1/4‑1 (MQ=255) tattgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcgggatcaaaaaagacgagctg < 1:435232‑M1/4‑1 (MQ=255) tgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtgtcaaaaaagacgagatgggg < 2:3361439‑M1/7‑3 (MQ=255) tgatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctggcg > 2:3641170‑M1/70‑76 (MQ=255) gatatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctggggtatcaaaaaagacgagccggcgc < 2:3949773‑M1/8‑1 (MQ=255) atatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctggcgct > 1:5743352‑M1/68‑76 (MQ=255) atatcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcgggatcaaaaaagacgagctggcgct < 1:6123187‑M1/9‑1 (MQ=255) tcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctggcgctggc > 1:1516915‑M1/65‑76 (MQ=255) tcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctggcgctggc > 2:5564798‑M1/65‑76 (MQ=255) tcgaacgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgagctggcgctggc > 2:28626‑M1/65‑76 (MQ=255) aacgcggtggggcgaaacttatccgcattcgtgataacggctgcgggatcaaaaaagacgaGCTGGCGCTGGggcg < 1:2813136‑M1/15‑1 (MQ=255) cgcggtggggcgaaacttatccgcattcgtgataacggctgcggtggcaaaaaagacaaGCTGGCGCAggggcggc < 1:3953394‑M1/17‑3 (MQ=255) cgcggtggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTc > 1:1013690‑M1/60‑76 (MQ=255) gcggtggggcgaaacttatccgcattcgtgataacggctgcgggatcaaaaaaaacgaGCTGGGGCtggcgcggca < 2:2212342‑M1/18‑4 (MQ=255) cggtggggcgaaccttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCAt > 2:5605868‑M1/58‑76 (MQ=255) ggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGcca > 2:5359485‑M1/54‑76 (MQ=255) ggggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGcca > 2:3397809‑M1/54‑76 (MQ=255) gggcgaaacttatccgcattcgtgataacggctgcgggatcaaaaaagacgaGCTGGCGCTGGCGCGGCATGccac < 1:625603‑M1/24‑1 (MQ=255) ggcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGccacc > 1:3697076‑M1/52‑76 (MQ=255) gcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGccccca < 1:2183967‑M1/26‑1 (MQ=255) gcgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGccacca < 1:5409096‑M1/26‑1 (MQ=255) cgaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGGCATGCCACCAg < 1:1182583‑M1/27‑1 (MQ=255) gaaacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGt < 2:5316138‑M1/28‑1 (MQ=255) aacttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTaa > 1:1058027‑M1/47‑76 (MQ=255) acttatccgcattcgtgataccggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTaaa > 2:2213521‑M1/46‑76 (MQ=255) acttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTaaa > 1:5356237‑M1/46‑76 (MQ=255) acttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTaaa > 1:2854476‑M1/46‑76 (MQ=255) acttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTaaa > 1:2632604‑M1/46‑76 (MQ=255) acttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTaaa > 1:2212342‑M1/46‑76 (MQ=255) acttatccgaattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTaaa > 1:426412‑M1/46‑76 (MQ=255) cttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGGCATGCCACCCGTtaaa < 1:611331‑M1/32‑1 (MQ=255) ttatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAAt < 1:6276513‑M1/33‑1 (MQ=255) tatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGGGCTGGGGCGTCCTGCCACCCGTCAAATc < 1:4585676‑M1/34‑1 (MQ=255) tatccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATc > 1:5537680‑M1/43‑76 (MQ=255) cATTCGTGATAACGGCTGCGGGATCAAAAAAAACGAGCTGGCGCTG‑‑‑‑‑GG‑GCGTCATGCCACCAGTAAAAATGCctcc > 1:4366606/1‑75 (MQ=255) atccgcattcgtgataccggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCg > 2:623438‑M1/42‑76 (MQ=255) atccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCcgtaaaaaag < 2:812482‑M1/35‑4 (MQ=255) atccgcattcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGGCACGCCACCCGTCAAATCg < 1:5222912‑M1/35‑1 (MQ=255) ccgctttcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGcc > 2:5565421‑M1/40‑76 (MQ=255) gcattcgtgataacggctgcggtatcaaaaaaggcgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCctc > 1:6051878‑M1/38‑76 (MQ=255) gTGATAACGGCTGGGGTATCAAAAAAGACGAGCTG‑‑‑‑‑GG‑GCTGGGGCGTCATGCCACCCGTAAAAACGCCCCTCTggg > 2:6064896/1‑75 (MQ=255) cattcgtgataacggctgcggtatcaaaaaagacgaCCTGGAGCTGGCGGGTCTTGCCACCAGTAAAATCGCctct > 2:1553323‑M1/37‑76 (MQ=255) ttcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGGGCGGCATGCCACCAGGAAAAACGCctctct < 1:2360722‑M1/42‑1 (MQ=255) ttcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCctctct > 1:322116‑M1/35‑76 (MQ=255) ttcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCctctct > 1:3483140‑M1/35‑76 (MQ=255) ttcgtgataacggctgcggtaaaaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCctctct > 2:3203583‑M1/35‑76 (MQ=255) ttcgtaataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCctctct > 2:940412‑M1/35‑76 (MQ=255) tcgtgataacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTg > 1:800484‑M1/34‑76 (MQ=255) gtgataacggctgcgggatcaaaaaagacgaGCTGGCGCTGGCGCGGCATGCCACCAGTAAAATCGCCTCTCTGGa < 1:3785286‑M1/45‑1 (MQ=255) taataacggctgcggtatcaaaaaaaacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGAc > 1:6059810‑M1/31‑76 (MQ=255) ataacggctgcggtatcaaaaaagacgaGCTGGCGCGCGGGCGGCATGCCACCAGGAAAATCGCCTCTCTGGACGa < 2:4468458‑M1/48‑1 (MQ=255) taacggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGAt > 1:3848696‑M1/28‑76 (MQ=255) acggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGAtct > 1:5538107‑M1/26‑76 (MQ=255) cggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGAtctc > 1:1349805‑M1/25‑76 (MQ=255) cggctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGAtctc > 2:796580‑M1/25‑76 (MQ=255) gcctgcggtatcaaaaaaggcgaGCTGGCGCTGGCGGGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCg > 2:2515823‑M1/24‑76 (MQ=255) ctgcggtatcaaaaaagtcgaGCTGGGGCTGGCGCCTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGaa > 2:291644‑M1/22‑76 (MQ=255) ctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGaa < 2:2780014‑M1/55‑1 (MQ=255) ctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGaa > 1:3142906‑M1/22‑76 (MQ=255) ctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGaa < 1:6156024‑M1/55‑1 (MQ=255) ctgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCAGGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGaa > 2:1002395‑M1/22‑76 (MQ=255) tggggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAg > 2:5268052‑M1/21‑76 (MQ=255) tgcggtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAg < 1:1418678‑M1/56‑1 (MQ=255) cggaatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGcc > 2:4585638‑M1/19‑76 (MQ=255) gtatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCAt < 1:3485811‑M1/60‑1 (MQ=255) tatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCAtt < 1:5831346‑M1/61‑1 (MQ=255) tatcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCAtt < 2:4629551‑M1/61‑1 (MQ=255) atcaaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTa < 1:4671720‑M1/62‑1 (MQ=255) aaaaaaaaagacgaGCGGGCGCTGGCGCGTCAGGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTa > 2:1001697‑M1/15‑76 (MQ=255) aaaaaaaggccgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTAt > 1:3193404‑M1/14‑76 (MQ=255) caaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATc < 1:1876065‑M1/64‑1 (MQ=255) aaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCa < 2:1626227‑M1/65‑1 (MQ=255) aaaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCa > 1:2695822‑M1/12‑76 (MQ=255) aaaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAg > 1:2071981‑M1/11‑76 (MQ=255) aaaagccgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGc > 1:4957832‑M1/10‑76 (MQ=255) aaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGc < 1:5857849‑M1/67‑1 (MQ=255) aaaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATATCGAAGCCATTATCAGc < 1:2607093‑M1/67‑1 (MQ=255) aaagacgaGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGcc < 2:4597179‑M1/68‑1 (MQ=255) aagacggGCGGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCt > 1:427673‑M1/8‑76 (MQ=255) agacgaGCTGGCGCTGGCGCGTCATCCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTg > 1:4551020‑M1/7‑76 (MQ=255) gacggGCGGGCCCTGGCGCGTCATCCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTgg > 2:151940‑M1/6‑76 (MQ=255) gaGCTGGCGCGGGCGGGTCATCCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCt > 2:5662501‑M1/3‑76 (MQ=255) aGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCtt > 1:4224639‑M1/2‑76 (MQ=255) aGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCtt < 1:2066109‑M1/75‑1 (MQ=255) GCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCttt < 1:608216‑M1/76‑1 (MQ=255) | TGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGACGAGCTGGCGCTGGCGCTGGCGCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTT > REL606/4375698‑4375848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |