| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893608–3894994 | 3901930 | 6937–8323 | 123 [112] | [0] 313 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 299 (1.140) | 113/146 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
Only 100 of 358 total aligned reads displayed.
GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:8894292/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:92702/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 2:1182819/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 2:6087677/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 2:372779/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 2:2846887/1‑76 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 2:2531649/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 2:158830/1‑76 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:465544/76‑1 TGACTCTAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑T > 2:3182652/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑T > 1:8409094/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑T > 2:2037211/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑T < 1:4055547/76‑1 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑T < 1:4507707/76‑1 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCC > 1:7514291/1‑76 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCC > 1:2824949/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCA > 1:8280836/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCA > 1:6532200/1‑76 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAG > 1:1506029/1‑76 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGT > 1:4341963/1‑76 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTG < 1:4745937/76‑1 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGA > 1:8183675/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGAC > 1:5689217/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGAC > 2:7040852/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGAC > 1:2906105/1‑76 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACC < 1:7996910/76‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACC < 2:1306843/76‑1 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCA < 2:7740804/76‑1 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCA > 2:6314352/1‑76 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCA < 2:2189205/76‑1 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCA > 1:6320111/1‑76 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAG > 1:1094813/1‑76 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAG > 2:8120466/1‑76 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAG < 2:3609665/76‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCAC < 1:165977/76‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCAC < 1:5004677/76‑1 GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACG > 2:8397775/1‑76 ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCC > 2:8771132/1‑76 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCC < 1:6724487/76‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCA < 2:228133/76‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCA < 1:3256326/76‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAA > 2:5131429/1‑76 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAG < 1:3715792/76‑1 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAG < 1:6886470/76‑1 CTATTTGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCCGGTGAACAGCACGCCGACAAca > 2:8198331/1‑74 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGA < 1:2334490/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGA < 2:6629854/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGA > 1:2710305/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 2:4776504/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 2:4239893/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 2:2670975/76‑1 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 2:7341722/1‑76 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:7962917/1‑76 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 2:2380992/1‑76 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGC > 1:536368/1‑76 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGC > 1:118915/1‑76 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGC > 2:4668547/1‑76 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGC > 2:2778634/1‑76 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCC > 1:5875409/1‑76 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT > 2:3450037/1‑76 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT > 1:1315548/1‑76 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT < 1:5844495/76‑1 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT < 2:2117496/76‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAA > 1:3412497/1‑76 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAA < 1:4169752/76‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAA > 1:5055204/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 2:249601/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 1:6186168/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT > 2:3032023/1‑76 TAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 2:3304807/1‑76 TAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 1:7703014/1‑76 TAACTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCATAAAATTG > 1:4820267/1‑76 CTGTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC > 1:100161/1‑76 GTCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTACAATTGGCCCC > 1:5717081/1‑76 TCCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 2:4570719/76‑1 CCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCAC > 2:4396029/1‑76 CCAACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCAC > 2:6811912/1‑76 AACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCA < 2:5725539/76‑1 ACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG > 1:1566795/1‑76 ACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG > 1:7635741/1‑76 ACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG > 2:4059498/1‑76 ACTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG < 2:2332154/76‑1 CTTTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGA > 2:7141259/1‑76 TTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC > 1:8529851/1‑76 TTTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGACCCACCAGACC < 1:1859997/76‑1 TTTGGGGTCAGTACGGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCC < 2:1761050/76‑1 TTTGGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCC < 1:5425340/76‑1 GGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC > 1:7203824/1‑76 GGGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC < 2:8597698/76‑1 GGGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCA > 2:5442077/1‑76 GGTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCCCCAGACCCGGCAT < 1:8672839/76‑1 GTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 1:711755/76‑1 GTCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 1:2237962/76‑1 TCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGCACCGGCATGG > 2:7925472/1‑76 TCAGTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG < 2:693808/76‑1 GTACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGA > 2:7456102/1‑76 TACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC < 2:557909/76‑1 TACAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC < 2:1913604/76‑1 CAGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > 2:4285165/1‑76 AGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > 1:2033604/1‑76 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGG‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |