| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4260752 = | 401 (1.610) | 234 (0.940) | 97/150 | 0.6 | 36.9% | coding (1257/1293 nt) | yjcF | hypothetical protein |
| ? | REL606 | = 4506109 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
Only 100 of 644 total aligned reads displayed.
CTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTC > REL606/4260677‑4260827 | ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccc < 2:3242499‑M1/1‑1 (MQ=255)ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccc > 1:1452959‑M1/76‑76 (MQ=255)ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccc > 1:8040195‑M1/76‑76 (MQ=255)ctgatagaaacaaaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccc > 1:605946‑M1/76‑76 (MQ=255)ctTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTc < 2:2286187/76‑1 (MQ=255)ctTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTc > 1:902297/1‑76 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCa < 1:4680923‑M1/2‑1 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCa > 1:401485‑M1/75‑76 (MQ=255) taataaaaacataagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCa > 2:1970912‑M1/75‑76 (MQ=255) tttAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCAt < 1:1127108/76‑1 (MQ=255) tttAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCAt < 1:3297644/76‑1 (MQ=255) ttAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATa > 1:1954280/1‑76 (MQ=255) ttAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATa < 1:8114812/76‑1 (MQ=255) ttAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATa > 1:2550380/1‑76 (MQ=255) ttAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATa > 2:8210328/1‑76 (MQ=255) tagaaaaagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAg > 1:6864746‑M1/72‑76 (MQ=255) tAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTTATAg > 2:5769965/1‑76 (MQ=255) tAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAg < 1:727394/76‑1 (MQ=255) aaaGTCAATTCATTGGCTGGTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAAACTTCATaac > 2:6577218/1‑74 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCg < 2:5162137‑M1/7‑1 (MQ=255) aaGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCg < 2:3323983/76‑1 (MQ=255) aaGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCg < 1:4450354/76‑1 (MQ=255) aaGTCAATTCATTGGCTGGTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCg > 2:486812/1‑76 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGa < 2:2169264‑M1/8‑1 (MQ=255) aGTCAATTCATTGGCTGGTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGGAAACTTCATAGGGa > 2:1723028/1‑76 (MQ=255) tCAATTCATTTGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACt < 1:1824774/76‑1 (MQ=255) tCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGGCt > 1:7697722/1‑76 (MQ=255) tCAATTCATTGGCTGGTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATATTCATAGCGAcc > 2:3841649/1‑75 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTg < 1:5258407‑M1/11‑1 (MQ=255) aaTTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGc < 1:7832095/76‑1 (MQ=255) ttCATTGGCTGGTTTTTGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGcct > 2:406592/1‑74 (MQ=255) tCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATg < 2:3632357/76‑1 (MQ=255) tCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATg > 1:5635695/1‑76 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGa > 1:6801538‑M1/61‑76 (MQ=255) cATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGa < 1:791607/76‑1 (MQ=255) ttGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAg < 1:8182054/76‑1 (MQ=255) tGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGa > 1:6322903/1‑76 (MQ=255) tGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGa > 1:5485536/1‑76 (MQ=255) tGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGa > 1:1338269/1‑76 (MQ=255) gCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGAtt > 1:6453058/1‑76 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTAt < 2:4975849‑M1/23‑1 (MQ=255) gTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATc < 1:2954691/76‑1 (MQ=255) ttcttcGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATcc > 2:8120734/1‑76 (MQ=255) cttcGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTc > 1:7573521/1‑76 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGt > 1:5821354‑M1/47‑76 (MQ=255) cGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGt > 2:1094036/1‑76 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGtt < 1:5915050‑M1/31‑1 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGttt > 1:5087948‑M1/45‑76 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGttt < 1:5737292‑M1/32‑1 (MQ=255) ttAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTtgt > 2:4332133/1‑76 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACAt < 1:3113234‑M1/39‑1 (MQ=255) cctcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATg > 2:5461190‑M1/37‑76 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATg > 2:5284564‑M1/37‑76 (MQ=255) aaTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGcc < 2:6187429/76‑1 (MQ=255) aaTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGcc > 2:5911719/1‑76 (MQ=255) aaTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGcc > 2:7572667/1‑76 (MQ=255) catacactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCa < 1:169355‑M1/43‑1 (MQ=255) aTCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCa < 1:3798161/76‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTAt < 1:3175454‑M1/47‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTAt < 2:5583631‑M1/47‑1 (MQ=255) cATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATg > 1:3395659/1‑76 (MQ=255) cATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATg < 1:2285055/76‑1 (MQ=255) cTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGt > 2:3728844/1‑76 (MQ=255) ttGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTg < 1:4915595/76‑1 (MQ=255) ttGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTg > 2:7370619/1‑76 (MQ=255) ttGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTg > 2:3472564/1‑76 (MQ=255) aatcagtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTg > 2:309991‑M1/25‑76 (MQ=255) ataataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcac > 2:6744148/1‑76 (MQ=255) ataataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcac > 2:2913231/1‑76 (MQ=255) ataataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGGGGcac > 2:876116/1‑76 (MQ=255) taataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcaca > 1:1239275/1‑76 (MQ=255) gtaagttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGcaca > 2:4460081‑M1/20‑76 (MQ=255) aataTCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACaa > 2:7195648/1‑76 (MQ=255) atatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAt > 2:6883009/1‑76 (MQ=255) tatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc > 2:6100311/1‑76 (MQ=255) tatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc < 1:2463859/76‑1 (MQ=255) tatCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc < 1:2759198/76‑1 (MQ=255) agttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc > 2:7931269‑M1/17‑76 (MQ=255) agttggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtc > 1:5315686‑M1/17‑76 (MQ=255) atCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACCAtct > 2:1267153/1‑76 (MQ=255) atCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtct > 1:706377/1‑76 (MQ=255) tggcagcatcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtcttc < 2:2660608‑M1/63‑1 (MQ=255) tGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAAtcttct > 2:2549639/1‑76 (MQ=255) gCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATcttctt > 1:2653873/1‑76 (MQ=255) cAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCttcttc < 1:6139745/76‑1 (MQ=255) gTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCaa < 2:7779455/76‑1 (MQ=255) tAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCaaa > 2:699037/1‑76 (MQ=255) tAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCaaa < 1:2141687/76‑1 (MQ=255) aaTCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAg > 1:6653969/1‑76 (MQ=255) tcaccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGa > 2:4938263‑M1/6‑76 (MQ=255) aTCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGa > 2:781948/1‑76 (MQ=255) aTCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGa < 1:4086847/76‑1 (MQ=255) tCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa < 2:2844131/76‑1 (MQ=255) caccCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGaa < 1:4524115‑M1/72‑1 (MQ=255) accCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAagatt > 1:4214585‑M1/4‑74 (MQ=255) ttCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAtt > 2:6306224/1‑76 (MQ=255) cCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAAttt > 1:3592888‑M1/2‑76 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTc > 2:1430571/1‑76 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTc > 1:3548073/1‑76 (MQ=255) cATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTc > 1:1000309/1‑76 (MQ=255) | CTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCATAATATCTGCAGTAATCTTCATAGCGACTGCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTC > REL606/4260677‑4260827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |