| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4260752 = | 401 (1.610) | 234 (0.940) | 97/150 | 0.6 | 36.9% | coding (1257/1293 nt) | yjcF | hypothetical protein |
| ? | REL606 | = 4506109 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
Only 100 of 248 total aligned reads displayed.
GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATAT > REL606/4506037‑4506184 | aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCgtg > 2:7868053/1‑76 (MQ=35) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGtgtt > 2:6910035/1‑76 (MQ=39) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGtgtt < 2:5441137/76‑1 (MQ=39) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGtgttg > 2:5308174/1‑76 (MQ=40) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGtgttgt > 2:3429514/1‑76 (MQ=255) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGtgttgt > 1:8084937/1‑76 (MQ=255) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGtgttgt < 2:1746292/76‑1 (MQ=255) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGttgttg < 2:3773161/76‑1 (MQ=255) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCa < 2:7276674/76‑1 (MQ=255) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCa < 2:3101739/76‑1 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCat < 2:2874376/76‑2 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCaa > 2:2916233/1‑76 (MQ=255) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCaa > 2:5005924/1‑76 (MQ=255) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACAt > 1:2850721/1‑76 (MQ=255) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACAt < 1:7137534/76‑1 (MQ=255) aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATc < 2:1048347/76‑1 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCg > 1:3004646/1‑76 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCg > 1:5386479/1‑76 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGt > 1:3355359/1‑76 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTa > 2:6134159/1‑76 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgtg > 2:3452572/1‑76 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgtg > 2:8282427/1‑76 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgtgt < 1:7344567/76‑1 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgtgt < 1:1006050/76‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgtgtg > 2:5086622/1‑76 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgtgtgt > 1:6483084/1‑76 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGtgtgtg > 1:4141367/1‑76 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGtgtgtg > 1:5151372/1‑76 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGa > 2:2470695/1‑76 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGa > 1:5523387/1‑76 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgtgtgt > 1:2561920/1‑71 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGAtt < 2:1160201/76‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGAtt < 1:1354844/76‑1 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTg > 2:2236129/1‑76 (MQ=255) aaCGCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgc < 2:4566411/76‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgc < 2:394890/76‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgc < 1:6986807/76‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgc < 1:7449123/76‑1 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgcg < 1:6358973/76‑1 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgcg > 2:596528/1‑76 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgcg > 2:6047812/1‑76 (MQ=255) cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgcgc > 2:929415/1‑76 (MQ=255) ccATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCt < 1:4965617/76‑1 (MQ=255) ccATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCt < 1:943469/76‑1 (MQ=255) ccATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCt < 1:2089608/76‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTa > 1:3535531/1‑76 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTa > 2:6943738/1‑76 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTa < 2:3614696/76‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag < 1:376666/76‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag < 1:6136293/76‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag < 1:397925/76‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag < 1:1177150/76‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag > 2:4741367/1‑76 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag < 2:6547336/76‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag > 2:4088691/1‑76 (MQ=255) atcatACACTAAAGCAGTTAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag < 2:2046988/76‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTaga < 1:111315/76‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTaga > 1:1076986/1‑76 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGct > 2:7229984/1‑76 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGctt > 2:1923450/1‑76 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGctt < 2:4446971/76‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGcttctt < 1:5328901/76‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGcttctt > 2:560724/1‑76 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGCGTGTGGATTACGCCTAGAGcctctt > 2:1701264/1‑76 (MQ=37) tAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCttt > 2:3261083/1‑76 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAt < 2:898107/76‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAt > 1:2007378/1‑76 (MQ=255) aTCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAtt > 1:4855486/1‑76 (MQ=255) aTCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAtt < 2:2533348/76‑1 (MQ=255) cAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcg > 1:7587074/1‑76 (MQ=255) aGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgt > 2:583617/1‑76 (MQ=255) aGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgt > 1:2391297/1‑76 (MQ=255) gTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgtt < 2:5334501/76‑1 (MQ=255) tAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgttc > 1:6665318/1‑76 (MQ=255) tAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgttc < 1:2669118/76‑1 (MQ=255) aaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgttcg < 2:6659411/76‑1 (MQ=255) aaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgttcg > 1:7920084/1‑76 (MQ=255) aaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgttcg > 1:7242397/1‑76 (MQ=255) aaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAttcgttcg < 2:151023/76‑1 (MQ=255) gTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAg < 2:5218668/76‑1 (MQ=255) ttGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAgc < 1:1467730/76‑1 (MQ=255) ttGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAgc < 2:2557890/76‑1 (MQ=255) tGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAgcg > 1:449591/1‑76 (MQ=255) tGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAgcg < 1:5994630/76‑1 (MQ=255) gcagcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCa > 2:4656271/1‑76 (MQ=255) cagcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCAt < 1:3289164/76‑1 (MQ=255) cagcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCAt < 1:3429514/76‑1 (MQ=255) agcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTTTTCGTTCGAGCGCATc > 1:2255946/1‑76 (MQ=255) agcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATc > 2:5756769/1‑76 (MQ=255) agcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATc > 2:819853/1‑76 (MQ=255) gcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCg < 1:467987/76‑1 (MQ=255) gcaTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCg < 2:8148205/76‑1 (MQ=255) aTCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGcc > 2:4587085/1‑76 (MQ=255) tCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCa < 2:7504966/76‑1 (MQ=255) aCCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAat < 2:5426947/76‑1 (MQ=255) aCCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAat < 2:4294926/76‑1 (MQ=255) aCCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCCCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAat < 1:4397479/76‑1 (MQ=255) ccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAata < 2:7403458/76‑1 (MQ=255) ccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAata < 1:1219948/76‑1 (MQ=255) cGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAatat > 1:684891/1‑76 (MQ=255) | GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATAT > REL606/4506037‑4506184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |