| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4384397 | 325 (1.320) | 235 (0.960) | 99/148 | 0.5 | 42.0% | coding (53/426 nt) | yjeB | predicted DNA‑binding transcriptional regulator |
| ? | REL606 | 4505342 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
Only 100 of 331 total aligned reads displayed.
ATATTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACC > REL606/4505267‑4505414 | atatTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTg > 1:7530856/1‑76 (MQ=255)atatTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTg > 2:1353239/1‑76 (MQ=255)atatTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTg > 1:6512924/1‑76 (MQ=255)atatTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTg < 2:3916129/76‑1 (MQ=255) atTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGt > 2:2898591/1‑76 (MQ=255) atTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGt > 1:6037269/1‑76 (MQ=255) ttGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTaa > 1:1644669/1‑76 (MQ=255) ttGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTaa > 1:3337022/1‑76 (MQ=255) gagaTTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATg < 2:7264957/76‑1 (MQ=255) ttACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCa < 2:387736/76‑1 (MQ=255) tACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCac > 1:5890983/1‑75 (MQ=255) tACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCaa > 1:3085512/1‑76 (MQ=255) cATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACt > 1:2807857/1‑76 (MQ=255) aTAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACtt > 1:6311253/1‑76 (MQ=255) tAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTa > 2:8006105/1‑76 (MQ=255) tAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTa < 1:7945771/76‑1 (MQ=255) tAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTa > 2:7361810/1‑76 (MQ=255) tAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTa < 2:2783963/76‑1 (MQ=255) aaaaGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTAt > 2:7668420/1‑76 (MQ=255) aaaaGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTAt > 2:7434156/1‑76 (MQ=255) aaaGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTAtt > 2:2135945/1‑76 (MQ=255) aaGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTg < 1:1695814/76‑1 (MQ=255) aGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGa < 2:3253880/76‑1 (MQ=255) aGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGa > 1:663418/1‑76 (MQ=255) gATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGAt < 2:487181/76‑1 (MQ=255) aTAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGCTa > 2:5835342/1‑76 (MQ=255) tAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAg > 2:5028240/1‑76 (MQ=255) aaTCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAgt < 1:6973218/76‑1 (MQ=255) aTCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAgtg < 2:4644291/76‑1 (MQ=255) aTCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAgtg > 2:6213376/1‑76 (MQ=255) tctctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAgtgt > 1:4169699/1‑76 (MQ=255) tctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGttt < 2:3999765/76‑1 (MQ=255) tctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGttt > 1:2988808/1‑76 (MQ=255) tctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGttt > 1:7860747/1‑76 (MQ=255) ctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGtttt > 1:7074567/1‑76 (MQ=255) ctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGtttt > 1:4275053/1‑76 (MQ=255) ctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGtttt > 2:1611891/1‑76 (MQ=255) ctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGtttt < 2:1870141/76‑1 (MQ=255) ctcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGtttt > 1:5197126/1‑76 (MQ=255) tcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTa > 2:7232068/1‑76 (MQ=255) tcAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTa > 2:85188/1‑76 (MQ=255) cAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGTTAGTGTTTTAt > 2:6157469/1‑76 (MQ=255) aaGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATg < 1:8102513/76‑1 (MQ=255) aaGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATg > 1:803323/1‑76 (MQ=255) aaGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATg > 2:5322236/1‑76 (MQ=255) aaGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATg > 1:1810254/1‑76 (MQ=255) ggAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt > 1:6794512/1‑76 (MQ=255) gAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc > 1:3863110/1‑76 (MQ=255) aGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa < 2:4072551/76‑1 (MQ=255) aGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa < 2:6488101/76‑1 (MQ=255) tCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:4864981/1‑76 (MQ=255) tCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 2:4559671/1‑76 (MQ=255) tCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 2:2436066/76‑1 (MQ=255) tCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:5611203/1‑76 (MQ=255) cTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt > 1:7452320/1‑76 (MQ=255) cTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt > 2:5722551/1‑76 (MQ=255) cTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt > 1:6202906/1‑76 (MQ=255) cTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt < 1:3668921/76‑1 (MQ=255) ttATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa > 1:7575931/1‑76 (MQ=255) tATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa > 1:4953784/1‑76 (MQ=255) tATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa > 2:4375339/1‑76 (MQ=255) aTCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt > 1:4540664/1‑76 (MQ=255) tCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg < 1:2221799/76‑1 (MQ=255) tCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg > 2:3452507/1‑76 (MQ=255) cTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc < 1:1233598/76‑1 (MQ=255) aaaaCGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg < 1:2699485/76‑1 (MQ=255) aaaaCGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg > 2:6304911/1‑76 (MQ=255) aaaaCGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCg > 2:69188/1‑76 (MQ=255) aCGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg < 1:1047886/76‑1 (MQ=255) cGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa > 2:3055315/1‑76 (MQ=255) aaaTATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt < 2:2257283/76‑1 (MQ=255) aaaTATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 2:5521957/1‑76 (MQ=255) aaTATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt > 2:3695046/1‑76 (MQ=255) atatatAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 2:4424974/76‑1 (MQ=255) atataGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt > 1:530163/1‑76 (MQ=255) atataGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt > 1:7342465/1‑76 (MQ=255) tataGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTc > 1:1492346/1‑76 (MQ=255) ataGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa > 1:1864953/1‑76 (MQ=255) taGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt < 1:2174516/76‑1 (MQ=255) gTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc < 1:1918058/76‑1 (MQ=255) gTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc < 1:89456/76‑1 (MQ=255) gTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc < 2:5680272/76‑1 (MQ=255) tCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa > 1:1384216/1‑76 (MQ=255) cccTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg > 2:1292310/1‑76 (MQ=255) cccTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg > 2:5463748/1‑76 (MQ=255) cccTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg > 2:1193028/1‑76 (MQ=255) cccTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg > 1:242988/1‑76 (MQ=255) cccTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg < 1:7685013/76‑1 (MQ=255) cccTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg > 2:2666718/1‑76 (MQ=255) ccTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc > 1:2587215/1‑76 (MQ=40) ctcGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc > 2:5653162/1‑76 (MQ=35) ctcGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc > 1:5723621/1‑76 (MQ=35) tcGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa > 1:4781795/1‑76 (MQ=34) cGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc > 1:173283/1‑76 (MQ=32) cGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc < 1:4657084/76‑1 (MQ=32) cGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc > 2:3542318/1‑76 (MQ=32) cGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc < 2:3511336/76‑1 (MQ=32) cGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAc < 1:7619637/76‑1 (MQ=32) gTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc > 1:5428695/1‑76 (MQ=31) gTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc > 1:8172277/1‑76 (MQ=31) | ATATTTGAGATTTTACATAAAAGATAATCTCTCAAGGAGTCTTATCTGAAAACGAAATATATAGTCCCTCTCGTTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACC > REL606/4505267‑4505414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |