| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4275743 = | 41 (0.900) | 37 (0.940) | 33/130 | 0.2 | 52.3% | coding (205/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | = 4359351 | 32 (0.810) | coding (1679/1809 nt) | frdA | fumarate reductase | |||||
TTGCCGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4275826‑4275743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgctgatgGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCGAA < REL606/4359351‑4359278 TTGCCGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGA > 1:905140/1‑76 TGCCGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGAT < 1:365620/76‑1 GCCGACAGCTGGTTTAGCTCCGGCGATTTGAGCAGAGNCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATG > 1:1440476/1‑76 CCGACAGNTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGC > 2:1192513/1‑76 CCGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGC > 1:814318/1‑76 CGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCn < 1:297590/76‑2 CGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCT < 1:1091104/76‑1 CGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCT < 1:795316/76‑1 GACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTG < 2:1009302/76‑1 GACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTG > 1:404734/1‑76 CAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGAT < 2:261889/76‑1 CAGCGGGTTTAGCGCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGAT < 1:618194/76‑1 AGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATG > 2:75424/1‑76 AGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATG > 1:429334/1‑76 CTGGTAGAGCTCCGGCGATTTGATCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATTCTGATGGC < 2:62181/76‑1 TGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCA < 1:651385/76‑1 TGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCA > 1:1163243/1‑76 GGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTTGGCACAGAAAGCCGCCGAGAGCGGTGATGCTGATGGCAC > 2:1181593/1‑76 CCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCT < 2:519929/76‑1 CGATTTGAGCAAAGTCGTATATGGGGCACAGAAAGCCGCCGACAGCGGTGATGCTTATGGCACGACTCGCCTGGAG < 1:75424/76‑1 CGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAG > 2:1131773/1‑76 GATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGT < 2:468481/76‑1 TTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACA < 1:989317/76‑1 TTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACA < 2:184912/76‑1 TTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACA < 1:620273/76‑1 GAGCAAAGCCGAATATTGTGCAAAGAANGCNGGNGATAGCGNTGTTGCAGATGGCACGACTCGCCTGGAGTACAGC < 1:1288584/76‑1 GCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGA < 1:880632/76‑1 AAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACG > 1:558848/1‑76 AGCCGAATATTGGGCACAGAAAGCCNCTGACAGCGGCGATGCTGATGNCACAACTCGCCTGGAGTACAGCGACGTG < 1:218618/76‑1 CGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAG > 1:1003106/1‑76 ATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATT > 1:713121/1‑76 TATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGACGCTTA < 1:1369127/76‑1 ATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTAC > 1:1201709/1‑76 TGGGCAGAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTA < 1:539190/76‑1 GGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTAC < 1:676455/76‑1 GGCACAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACG < 1:1175390/76‑1 GCAAAGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGC < 1:502185/76‑1 AGAAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCC > 1:169967/1‑76 AGAAAGCCGCCGACAGCGGTGATGCNGTTGGCACGATTCGCCTGGATNACATCGACGTGAAGATTACTACGCTGCC < 1:224401/76‑1 GAAAGCTGGCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCG > 1:1371946/1‑76 AAAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGC > 2:1017413/1‑76 AAGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCC > 2:808650/1‑76 AGCCGCCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCA < 1:696930/76‑1 CCGACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAA < 2:353002/76‑1 GACAGCGGTGATACTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAAC > 2:640370/1‑76 ACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACG > 2:451804/1‑76 ACAGCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACGACGCTGCCGCCAGCTAAACG < 2:125518/76‑1 GCGGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGn < 1:451806/76‑2 GGTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTT < 2:458378/76‑1 GTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTA < 1:199007/76‑1 GTGATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTA < 2:295517/76‑1 ATGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTCTACGG > 2:1122571/1‑76 TGCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGT > 1:597400/1‑76 GCTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTG > 1:773426/1‑76 CTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGG > 1:300960/1‑76 CTGATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGG > 2:464293/1‑76 GATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAGACGCGTTTACGGTGGCG < 1:194102/76‑1 GATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCG < 1:422658/76‑1 GATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCG > 1:1380225/1‑76 GATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCG < 1:826121/76‑1 ATGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCGA < 1:1181595/76‑1 TGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCGAA > 2:488928/1‑76 TGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCGAA > 1:483424/1‑76 TGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCGAA < 1:572037/76‑1 TGGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCGAA > 1:262554/1‑76 TTGCCGACAGCTGGTTTAGCTCCGGCGATTTGAGCAAAGCCGAATATTGGGCACAGAAAGCCGCCGACAGCGGTGATGCTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4275826‑4275743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgctgatgGCACGACTCGCCTGGAGTACAGCGACGTGAAGATTACTACGCTGCCGCCAGCTAAACGCGTTTACGGTGGCGAA < REL606/4359351‑4359278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |