| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4275743 = | 41 (0.900) | 37 (0.940) | 33/130 | 0.2 | 52.3% | coding (205/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | = 4359351 | 32 (0.810) | coding (1679/1809 nt) | frdA | fumarate reductase | |||||
CTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCAGCT > REL606/4275668‑4275818 | ctGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgc > 1:324171/1‑76 (MQ=255)ctGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgc > 1:973822/1‑76 (MQ=255) ttcgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCa < 1:572037‑M1/2‑1 (MQ=255) ttcgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCa > 1:483424‑M1/75‑76 (MQ=255) ttcgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCa > 2:488928‑M1/75‑76 (MQ=255) ttcgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCa > 1:262554‑M1/75‑76 (MQ=255) tcgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCAt < 1:1181595‑M1/3‑1 (MQ=255) cgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATc < 1:826121‑M1/4‑1 (MQ=255) cgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATc < 1:422658‑M1/4‑1 (MQ=255) cgccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATc > 1:1380225‑M1/73‑76 (MQ=255) cgccaccgtaaacgcgtctagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATc < 1:194102‑M1/4‑1 (MQ=255) cAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgcatc < 2:817237/76‑1 (MQ=255) aaNAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgcgnca < 2:1216102/76‑1 (MQ=255) ccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAg > 2:464293‑M1/71‑76 (MQ=255) ccaccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAg > 1:300960‑M1/71‑76 (MQ=255) gAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgcatcagc < 2:1370709/76‑1 (MQ=255) gAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgcatcagc < 2:204583/76‑1 (MQ=255) caccgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGc > 1:773426‑M1/70‑76 (MQ=255) accgtaaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCa > 1:597400‑M1/69‑76 (MQ=255) ccgtagacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCAt > 2:1122571‑M1/68‑76 (MQ=255) ttttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgcatcagcatca > 1:649449/1‑76 (MQ=255) ttttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGgcatcagcatca < 2:1287976/76‑1 (MQ=255) ttttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGANTTAGATCTGCGCCAGCAGCGCGCAGgcatcagcatca < 1:1450933/76‑1 (MQ=255) ttttGCTTGGGGATAGTCCAGACTGCCCGGTTTGGTGTTTTTGATGTGCGCCAGCAGCGCGCAGgcatcagcatca < 1:671511/76‑1 (MQ=255) tttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCAc < 2:1010547/76‑1 (MQ=255) taaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCAc < 2:295517‑M1/12‑1 (MQ=255) taaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCAc < 1:199007‑M1/12‑1 (MQ=255) ttGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCAcc < 2:643088/76‑1 (MQ=255) aaacgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCAcc < 2:458378‑M1/13‑1 (MQ=255) tGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCg < 2:1143067/76‑1 (MQ=255) ncgcgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGc < 1:451806‑M1/15‑1 (MQ=255) ttGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTg < 2:1109517/76‑1 (MQ=255) ttGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTg > 2:1342976/1‑76 (MQ=255) cgtttagctggcggcagcgtcgtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGt < 2:125518‑M1/18‑1 (MQ=255) cgtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGt > 2:451804‑M1/59‑76 (MQ=255) gtttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGTATCACCGCTGTc > 2:640370‑M1/58‑76 (MQ=255) ttagctggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTcgg < 2:353002‑M1/21‑1 (MQ=255) tggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCt < 1:696930‑M1/26‑1 (MQ=255) tCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCtt < 2:476454/76‑1 (MQ=255) ggcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCtt > 2:808650‑M1/50‑76 (MQ=255) gcggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCttt > 2:1017413‑M1/49‑76 (MQ=255) cggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGCCAGCTTTc > 1:1371946‑M1/48‑76 (MQ=255) cAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTc > 2:984498/1‑76 (MQ=255) ggcagcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCt > 1:169967‑M1/47‑76 (MQ=255) ggcagcgtagtaatcttcacgtcgatgtnatccaggcgaatcgtgcCAACNGCATCACCGCTGTCGGCGGCTTTCt < 1:224401‑M1/30‑1 (MQ=255) gACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCtg > 2:903511/1‑76 (MQ=255) gACTGACCGGATTGGTGATTTTGATCGGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCtg < 1:1051344/76‑1 (MQ=255) cTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCtgtg < 2:755651/76‑1 (MQ=255) gcgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTTTGc < 1:502185‑M1/34‑1 (MQ=255) gACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGcc > 2:897300/1‑76 (MQ=255) gACCGGATTGATGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGcc > 1:118939/1‑76 (MQ=255) cgtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGcc < 1:1175390‑M1/35‑1 (MQ=255) gtagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGccc < 1:676455‑M1/36‑1 (MQ=255) aCCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGccc > 1:276787/1‑76 (MQ=255) tagtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTCTGCCCa < 1:539190‑M1/37‑1 (MQ=255) ccGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCa > 1:907109/1‑76 (MQ=255) ccGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCa < 1:597213/76‑1 (MQ=255) gtaatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAat > 1:1201709‑M1/38‑76 (MQ=255) taagcgtcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAata < 1:1369127‑M1/40‑1 (MQ=255) aatcttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAatat > 1:713121‑M1/36‑76 (MQ=255) ttGGTGATTTTGATCTGCTCCNGCNGCGCGCAGGCATCAGCATCACNGCTGTCGNCNGCTTTCTGTGCCCAATAtt > 2:223711/1‑76 (MQ=255) cttcacgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCg > 1:1003106‑M1/33‑76 (MQ=255) gATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCt > 2:355575/1‑76 (MQ=255) cacgtcgctgtactccaggcgagttgtgnCATCAGCATCGCCGCTGTCAGNGGCTTTCTGTGCCCAATATTCGGCt < 1:218618‑M1/47‑1 (MQ=255) ttttGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCttt < 1:1118381/76‑1 (MQ=255) ttttGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCttt < 2:941007/76‑1 (MQ=255) cgtcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCttt > 1:558848‑M1/28‑76 (MQ=255) tttGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTg < 2:348009/76‑1 (MQ=255) ttGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGc < 2:325077/76‑1 (MQ=255) tcgctgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGc < 1:880632‑M1/51‑1 (MQ=255) tGATCTGCGCCAGCAGCNCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTATGTGCCCAATCTTAGGCTTTGCt > 1:190706/1‑76 (MQ=255) gctgtactccaggcgagtcgtgcCATCTGCAACANCGCTATCNCCNGCNTTCTTTGCACAATATTCGGCTTTGCTc < 1:1288584‑M1/53‑1 (MQ=255) gATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTc > 2:261318/1‑76 (MQ=255) tgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCaa < 1:620273‑M1/55‑1 (MQ=255) tgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCaa < 2:184912‑M1/55‑1 (MQ=255) tgtactccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCaa < 1:989317‑M1/55‑1 (MQ=255) cTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCaaa > 2:844089/1‑76 (MQ=255) actccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATc < 2:468481‑M1/58‑1 (MQ=255) ctccaggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCg > 2:1131773‑M1/18‑76 (MQ=255) ctccaggcgagtcgtgcCATAAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCCATATACGACTTTGCTCAAATCg < 1:75424‑M1/59‑1 (MQ=255) ccAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGcc > 2:1356850/1‑76 (MQ=255) aggcgagtcgtgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCgg < 2:519929‑M1/63‑1 (MQ=255) agcagcGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTTCTCAAATCGCCgg > 1:644108/1‑76 (MQ=255) agcagcGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCgg > 2:112201/1‑76 (MQ=255) gcagcGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGa > 2:855638/1‑76 (MQ=255) cgcAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTaaa > 1:952450/1‑76 (MQ=255) gcAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAAc > 2:430396/1‑76 (MQ=255) gtgcCATCAGCATCACCGCTCTCGGCGGCTTTCTGTGCCAAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAAcc > 2:1181593‑M1/5‑76 (MQ=255) cAGGCATCAGCATCACCGCTGTCGGCGGCGTTCTGTGCCCAATATTCGGCTNTGCTTAATTCGCCGGAGCTAGAcc < 1:130071/76‑1 (MQ=255) tgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCa > 1:1163243‑M1/4‑76 (MQ=255) tgcCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCa < 1:651385‑M1/73‑1 (MQ=255) gcCATCAGAATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGATCAAATCGCCGGAGCTCTACCAg < 2:62181‑M1/74‑1 (MQ=255) CATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCAGCt > 2:75424‑M1/1‑76 (MQ=255) CATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCAGCt > 1:429334‑M1/1‑76 (MQ=255) | CTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATTTTGATCTGCGCCAGCAGCGCGCAGGCATCAGCATCACCGCTGTCGGCGGCTTTCTGTGCCCAATATTCGGCTTTGCTCAAATCGCCGGAGCTAAACCAGCT > REL606/4275668‑4275818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |