| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4275743 = | 41 (0.900) | 37 (0.940) | 33/130 | 0.2 | 52.3% | coding (205/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | = 4359351 | 32 (0.810) | coding (1679/1809 nt) | frdA | fumarate reductase | |||||
TTCGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAACCTTCGTCCAGA > REL606/4359278‑4359425 | ttCGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCca > 2:488928‑M2/1‑74 (MQ=255)ttCGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCca < 1:572037‑M2/76‑3 (MQ=255)ttCGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCca > 1:483424‑M2/1‑74 (MQ=255)ttCGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCca > 1:262554‑M2/1‑74 (MQ=255) tCGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcat < 1:1181595‑M2/76‑4 (MQ=255) cGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatc < 1:826121‑M2/76‑5 (MQ=255) cGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatc < 1:422658‑M2/76‑5 (MQ=255) cGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatc > 1:1380225‑M2/1‑72 (MQ=255) cGCCACCGTAAACGCGTCTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatc < 1:194102‑M2/76‑5 (MQ=255) ccACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcag > 2:464293‑M2/1‑70 (MQ=255) ccACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcag > 1:300960‑M2/1‑70 (MQ=255) cACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagc > 1:773426‑M2/1‑69 (MQ=255) aCCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagca > 1:597400‑M2/1‑68 (MQ=255) ccGTAGACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcat > 2:1122571‑M2/1‑67 (MQ=255) gTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCGCGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATcg > 1:1246702/1‑76 (MQ=255) gTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATcg > 1:797491/1‑76 (MQ=255) tAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcac < 1:199007‑M2/76‑13 (MQ=255) tAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcac < 2:295517‑M2/76‑13 (MQ=255) aaaCGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcacc < 2:458378‑M2/76‑14 (MQ=255) ncgcgtTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgc < 1:451806‑M2/75‑16 (MQ=255) aCGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGa < 1:590883/76‑1 (MQ=255) cgTTTAGCTGGCGGCAGCGTCGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgt < 2:125518‑M2/76‑19 (MQ=255) cgTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgt > 2:451804‑M2/1‑58 (MQ=255) gTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagtatcaccgctgtc > 2:640370‑M2/1‑57 (MQ=255) tttAGCTGGCGGCAGCGTANTNAGCTTCANGTCGCTGTACTCCCGGCGAGTNGTNCCTTCAGCATCGCGGAAGGCg < 2:223496/76‑1 (MQ=255) ttAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcgg < 2:353002‑M2/76‑22 (MQ=255) aGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAgg < 1:708238/76‑1 (MQ=255) tGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggct < 1:696930‑M2/76‑27 (MQ=255) ggcggcAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctt > 2:808650‑M2/1‑49 (MQ=255) ggcggcAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGgtgt < 2:666656/76‑1 (MQ=255) ggcggcAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGgtgt < 2:832372/76‑1 (MQ=255) gcggcAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggcttt > 2:1017413‑M2/1‑48 (MQ=255) cggcAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcgccagctttc > 1:1371946‑M2/1‑47 (MQ=255) ggcAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttct > 1:169967‑M2/1‑46 (MQ=255) ggcAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGtt < 2:682688/76‑1 (MQ=255) ggcAGCGTAGTAATCTTCACGTCGATGTNATCCAGGCGAATCGTGCcaacngcatcaccgctgtcggcggctttct < 1:224401‑M2/76‑31 (MQ=255) aGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGa > 2:772015/1‑76 (MQ=255) aGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGa > 2:197608/1‑76 (MQ=255) gCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctttgc < 1:502185‑M2/76‑35 (MQ=255) cGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcc < 1:1175390‑M2/76‑36 (MQ=255) cGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGGGTGTTTGAgg > 1:954134/1‑76 (MQ=255) cGTAGTAATCCTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAgg > 1:1398245/1‑76 (MQ=255) gtagtaATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgccc < 1:676455‑M2/76‑37 (MQ=255) tagtaATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctctgccca < 1:539190‑M2/76‑38 (MQ=255) gtaATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaat > 1:1201709‑M2/1‑37 (MQ=255) taATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGATGTAGtt < 1:1386671/76‑1 (MQ=255) taATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGtt > 2:925223/1‑76 (MQ=255) taAGCGTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaata < 1:1369127‑M2/76‑41 (MQ=255) aaTCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatat > 1:713121‑M2/1‑35 (MQ=255) cTTCACGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcg > 1:1003106‑M2/1‑32 (MQ=255) cTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGAcg < 2:1297828/76‑1 (MQ=255) ttCACGTCGCTGTTCTCCAGGCGAGTCGTGCCATCCGCATCGCGGATGGCGCGGGTGTGTTTGAGGAAGTTGAagt > 1:65985/1‑76 (MQ=255) cACGTCGCTGTACTCCAGGCGAGTTGTGNcatcagcatcgccgctgtcagnggctttctgtgcccaatattcggct < 1:218618‑M2/76‑48 (MQ=255) aCGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGAATCGCGNAAGGCGAGGGTGTGTTTGNGGNAGTTGAcgtcgt > 1:1213276/1‑76 (MQ=255) cGTCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggcttt > 1:558848‑M2/1‑27 (MQ=255) cGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACgtcgtc < 1:777564/76‑1 (MQ=255) tCGCTGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgc < 1:880632‑M2/76‑52 (MQ=255) cGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACg > 1:107967/1‑76 (MQ=255) gCTGTACTCCAGGCGAGTCGTGCcatctgcaacancgctatcnccngcnttctttgcacaatattcggctttgctc < 1:1288584‑M2/76‑54 (MQ=255) tGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaa < 2:184912‑M2/76‑56 (MQ=255) tGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaa < 1:989317‑M2/76‑56 (MQ=255) tGTACTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaa < 1:620273‑M2/76‑56 (MQ=255) aCTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaaatc < 2:468481‑M2/76‑59 (MQ=255) aCTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTc < 2:920679/73‑1 (MQ=255) aCTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTc > 1:920681/1‑73 (MQ=255) cTCCAGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaaatcg > 2:1131773‑M2/1‑17 (MQ=255) cTCCAGGCGAGTCGTGCcataagcatcaccgctgtcggcggctttctgtgccccatatacgactttgctcaaatcg < 1:75424‑M2/76‑60 (MQ=255) ccAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCa > 2:1041338/1‑76 (MQ=255) cAGGCGAGTCGTGCCATCAGCATCGCGGCAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCaa > 2:806403/1‑76 (MQ=255) aGGCGAGTCGTGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaaatcgccgg < 2:519929‑M2/76‑64 (MQ=255) ggCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAAcc < 2:797489/76‑1 (MQ=255) ggCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAAcc < 2:1246700/76‑1 (MQ=255) cGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGGTGACGTCGTCACGCTCGGTGCAACCtt < 1:1316836/76‑1 (MQ=255) aGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAACCTTCg > 1:478830/1‑76 (MQ=255) gTGCcatcagcatcaccgctctcggcggctttctgtgccaaatattcggctttgctcaaatcgccggagctaaacc > 2:1181593‑M2/1‑4 (MQ=255) gTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAACCTTCGTCCa > 2:567878/1‑76 (MQ=255) tGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaaatcgccggagctaaacca < 1:651385‑M2/76‑74 (MQ=255) tGCcatcagcatcaccgctgtcggcggctttctgtgcccaatattcggctttgctcaaatcgccggagctaaacca > 1:1163243‑M2/1‑3 (MQ=255) tGCCATCAGCATCGCGGAAGGGGAGGGTGTGGTTGAGGAAGTTGACGTTGTCACGCTCGGTGCAACCTTCGTCCAg < 1:1318211/76‑1 (MQ=255) tGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAACCTTCGTCCAg > 2:1037646/1‑76 (MQ=255) gCcatcagaatcaccgctgtcggcggctttctgtgcccaatattcggctttgatcaaatcgccggagctctaccag < 2:62181‑M2/76‑75 (MQ=255) gCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAACCTTCGTCCAGa < 1:1148360/76‑1 (MQ=255) gCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAACCTTCGTCCAGa > 2:155771/1‑76 (MQ=255) | TTCGCCACCGTAAACGCGTTTAGCTGGCGGCAGCGTAGTAATCTTCACGTCGCTGTACTCCAGGCGAGTCGTGCCATCAGCATCGCGGAAGGCGAGGGTGTGTTTGAGGAAGTTGACGTCGTCACGCTCGGTGCAACCTTCGTCCAGA > REL606/4359278‑4359425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |