New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 3203123301 (1.230)16 (0.090)
+GTTTACGCTGGCGGGTTTTCGT		 9/106 11.6 7.2% intergenic (+571/+431) yhaC/garK hypothetical protein/glycerate kinase I
?REL606 3203139 = 289 (1.180)intergenic (+587/+415) yhaC/garK hypothetical protein/glycerate kinase I
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3203067‑3203123
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAATCAGGTGAAACTGACCGATAAGCCGGG  >  REL606/3203139‑3203169
                                                         ||||||||||||||||||||||                               
TATAGCGTCGTGGCCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGGTTTACGCTGGCGGGTTTT                                    <  2:5681466/76‑1
       gCGTGGACAGTCATTCATCTTTCTCCCCCCCCAAAAGAAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAA                             <  1:4945665/75‑1
          gGGACAGTCATTCTTCTTTCTGCCCCCCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCA                          <  1:7159188/75‑1
                tTCATTCATCTTTCTCCCCCCCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAA                    <  1:5941013/75‑1
                 TCATTCCTCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAA                   <  2:6458086/76‑1
                    TTCTTCTTCCTCCCCCCCCAAAAGAAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTG                <  1:4161383/76‑1
                        ttTTTCTGCCCCCCCAAAACCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCG            <  1:2584528/74‑1
                        TCTTCCTCCCCCTCCAAAAGCAACACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCG            <  1:433087/76‑1
                           tcCTGCCCCTCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATA         <  2:4555830/74‑1
                           TTCTGCCCCTCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATA         <  2:4848031/76‑1
                           TTCTGCCCCCCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATA         <  2:2149098/76‑1
                           TTCTGCCCCACCAAAAGAAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATA         <  2:1045208/76‑1
                           TTCTCCCCCTCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATA         <  2:723660/76‑1
                           TTCTCCCCCCCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATA         <  1:6736948/76‑1
                             cgGCCCCACCAAAAACAAACGCCCGCCGGTTTACTCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATAAG       <  1:4655351/74‑1
                               GCCCCCCCAAAAGCAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATAAGCC     <  2:6194339/76‑1
                                  CCTCCAAAACAAAAACCCCGCCGGTTTACGCTGGCGGGTTTTCGTTAAATCAGGTGAAACTGACCGATAAGCCGct  <  2:7781441/76‑3
                                                         ||||||||||||||||||||||                               
TATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3203067‑3203123
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAATCAGGTGAAACTGACCGATAAGCCGGG  >  REL606/3203139‑3203169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.