| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,145,967 | +TAT | coding (104/1842 nt) | rpoD → | RNA polymerase sigma factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3145964 | 2 (0.010) | 345 (1.390) +TAT |
123/138 | 0.0 | 99.4% | coding (101/1842 nt) | rpoD | RNA polymerase sigma factor |
| ? | REL606 | 3145965 = | 2 (0.010) | coding (102/1842 nt) | rpoD | RNA polymerase sigma factor | |||||
Only 100 of 382 total aligned reads displayed.
GAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145890‑3145964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > REL606/3145965‑3146039 ||| AAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATA < 2:6094408/76‑1 AACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATAT < 2:4878695/76‑1 AACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATAT < 2:2350509/76‑1 ACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATT > 1:5596009/1‑76 ACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATT < 1:6263989/76‑1 TTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTAT > 1:3264693/1‑76 TTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTAT < 2:1426261/76‑1 TCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATC < 1:119074/76‑1 TTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGT < 1:354883/76‑1 TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC > 2:2929993/1‑76 TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC < 1:7444833/76‑1 TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC > 2:8074513/1‑76 TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC > 1:4119383/1‑76 CGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAG > 2:317874/1‑76 CGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAG > 1:426194/1‑76 GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGA > 2:3119122/1‑76 GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGA > 1:4701019/1‑76 GGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATC < 2:6571799/76‑1 GGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATC < 2:6826020/76‑1 GTAAGGAGCAAGGCTATCTGACCTGTGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA < 1:6864909/76‑1 GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA > 1:8078382/1‑76 GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA < 1:793296/76‑1 GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA < 1:1731784/76‑1 GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA > 1:3170729/1‑76 AAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGA < 1:3719582/76‑1 AAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGA < 2:7463483/76‑1 GAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCG < 1:7112972/76‑1 AGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGA < 1:876034/76‑1 CAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAG < 2:5272026/76‑1 CAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAG > 2:1006582/1‑76 AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGA > 2:1737597/1‑76 AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGA < 1:8111598/76‑1 AGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGAC < 1:7649285/76‑1 GGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACA > 2:2144399/1‑76 GGCTATCTGACATATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACA < 2:8367870/76‑1 GCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACAT > 2:6698970/1‑76 CTATCTTACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATC < 1:6163829/76‑1 CTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATC < 1:5848046/76‑1 TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCA > 1:1831218/1‑76 ATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCAT > 1:4587657/1‑76 CTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCC < 1:7234237/76‑1 CTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCC > 1:3048771/1‑76 TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCA < 1:5732808/76‑1 GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAA < 2:2660242/76‑1 GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAA < 2:5666241/76‑1 GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAA > 1:5205060/1‑76 GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCATCGATTCAGATCAGATCGAAGACATCATCCAA > 2:2830103/1‑76 CCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAAT > 1:3339140/1‑76 CCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAAT < 2:7296521/76‑1 CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATG > 2:3045265/1‑76 CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATG > 2:1921087/1‑76 TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGCAATCATCCAAATGA > 2:5449704/1‑76 TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGA > 1:7830313/1‑76 TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGA > 1:1419825/1‑76 TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGA > 2:5827959/1‑76 ATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGAT > 1:5457554/1‑76 TGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATC < 1:1514112/76‑1 GCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCA < 1:5054510/76‑1 GCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCA < 2:3898667/76‑1 CGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAAC < 2:3561929/76‑1 GAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACG < 2:5215415/76‑1 GAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACG < 1:2899926/76‑1 GTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACA > 2:7616207/1‑76 GTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACA < 1:5312727/76‑1 GTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACA > 2:6983690/1‑76 TCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACAT < 2:4634477/76‑1 TCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACAT < 1:3945257/76‑1 AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG < 1:6477826/76‑1 AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG > 2:3311157/1‑76 AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG < 2:1214241/76‑1 AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG > 1:4807905/1‑76 AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG > 2:5309825/1‑76 ATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGG < 1:2170199/76‑1 TGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGC > 1:2237600/1‑76 ACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCAT < 1:4397598/76‑1 ACCATCTGCCAGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCAT < 2:6292662/76‑1 CATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTC > 2:3360216/1‑76 CATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTC < 2:426482/76‑1 CATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTC < 1:311475/76‑1 ATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCA < 1:6600715/76‑1 TCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAG < 1:7305156/76‑1 TGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGT < 1:1054230/76‑1 GCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTG < 1:2857589/76‑1 GCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTG > 2:1270134/1‑76 GCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTG < 1:2586182/76‑1 CCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGA < 2:277484/76‑1 CGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAT > 2:1566576/1‑76 GGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATG < 1:5385649/76‑1 AAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGA > 1:4902451/1‑76 GATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAG < 2:7239597/76‑1 GATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAG > 1:605287/1‑76 ATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGA > 2:4566692/1‑76 ATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGA > 2:7896791/1‑76 TATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAA > 1:198854/1‑76 ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG < 1:3474097/76‑1 ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG > 2:1644016/1‑76 ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG > 2:4791461/1‑76 ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG > 1:6384213/1‑76 TTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > 1:2487925/1‑76 TTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > 2:2869346/1‑76 ||| GAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145890‑3145964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > REL606/3145965‑3146039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |