| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,145,967 | +TAT | coding (104/1842 nt) | rpoD → | RNA polymerase sigma factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3145964 | 2 (0.010) | 345 (1.390) +TAT |
123/138 | 0.0 | 99.4% | coding (101/1842 nt) | rpoD | RNA polymerase sigma factor |
| ? | REL606 | 3145965 = | 2 (0.010) | coding (102/1842 nt) | rpoD | RNA polymerase sigma factor | |||||
Only 100 of 366 total aligned reads displayed.
TGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > REL606/3145889‑3146039 | tGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGa > 2:3380228/1‑76 (MQ=255) gAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAt > 2:167211‑M1/1‑75 (MQ=255) gAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAt < 2:2974989‑M1/76‑2 (MQ=255) aaaCTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAta < 1:7836733‑M1/76‑3 (MQ=255) aaCTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtat < 1:6130371‑M1/76‑4 (MQ=255) aaCTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtat < 2:2350509‑M1/76‑4 (MQ=255) aCTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtatt < 2:161025‑M1/76‑5 (MQ=255) ttcttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattat < 2:1426261‑M1/76‑7 (MQ=255) ttcttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattat < 2:663505‑M1/76‑7 (MQ=255) ttcttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattat > 2:4879222‑M1/1‑70 (MQ=255) tcttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatc < 1:119074‑M1/76‑8 (MQ=255) tcttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatc > 2:5344896‑M1/1‑69 (MQ=255) cttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcg > 1:2964594‑M1/1‑68 (MQ=255) cttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcg < 1:529789‑M1/76‑9 (MQ=255) ttGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgt > 1:7143070‑M1/1‑67 (MQ=255) tGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtc > 1:4119383‑M1/1‑66 (MQ=255) tGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtc > 2:8074513‑M1/1‑66 (MQ=255) gTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcg < 2:793518‑M1/76‑12 (MQ=255) tCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcga > 1:8090026‑M1/1‑64 (MQ=255) cACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgat > 1:2269083‑M1/1‑63 (MQ=255) ccGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattca < 1:5925798‑M1/76‑17 (MQ=255) ccGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattca < 1:7393511‑M1/76‑17 (MQ=255) cGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcag < 1:2510180‑M1/76‑18 (MQ=255) gTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcaga > 2:4631894‑M1/1‑58 (MQ=255) gTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcaga > 1:1780551‑M1/1‑58 (MQ=255) gTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcaga > 1:4701019‑M1/1‑58 (MQ=255) gTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatca < 1:6583382‑M1/76‑22 (MQ=255) gTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatca < 2:308420‑M1/76‑22 (MQ=255) tAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcag > 1:6820545‑M1/1‑54 (MQ=255) aaGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcaga < 2:7463483‑M1/76‑24 (MQ=255) aGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagat < 1:7655426‑M1/76‑25 (MQ=255) gAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCAGCTGCCGGAAGAtattatcgtcgattcagatcagatcg < 2:2907153‑M1/76‑27 (MQ=255) aGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcga < 1:876034‑M1/76‑28 (MQ=255) aGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcga < 2:1794943‑M1/76‑28 (MQ=255) gCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaa < 1:3950016‑M1/76‑29 (MQ=255) gCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaa > 1:2757463‑M1/1‑48 (MQ=255) cAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaag > 2:1006582‑M1/1‑47 (MQ=255) aaGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaaga > 1:8126844‑M1/1‑46 (MQ=255) ggCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagaca > 2:2144399‑M1/1‑44 (MQ=255) ggCTATCTGACATATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagaca < 2:8367870‑M1/76‑33 (MQ=255) cTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatc > 1:624049‑M1/1‑42 (MQ=255) tATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatca > 1:4423712‑M1/1‑41 (MQ=255) aTCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcat > 2:4557621‑M1/1‑40 (MQ=255) aTCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcat > 1:4283476‑M1/1‑40 (MQ=255) aTCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcat > 1:5502006‑M1/1‑40 (MQ=255) aTCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcat > 1:5449345‑M1/1‑40 (MQ=255) aTCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcat > 1:4587657‑M1/1‑40 (MQ=255) cTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatcc < 1:6302893‑M1/76‑39 (MQ=255) tGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatcca < 1:2117664‑M1/76‑40 (MQ=255) gACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaa < 2:2660242‑M1/76‑41 (MQ=255) gACCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaa > 1:5205060‑M1/1‑36 (MQ=255) aCCTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaa > 2:2805706‑M1/1‑35 (MQ=255) ccTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaat > 2:6830609‑M1/1‑34 (MQ=255) ccTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaat > 2:6509312‑M1/1‑34 (MQ=255) ccTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaat < 2:7296521‑M1/76‑43 (MQ=255) ccTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaat > 1:3334912‑M1/1‑34 (MQ=255) cTATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatg > 2:4764649‑M1/1‑33 (MQ=255) tATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatga > 2:5827959‑M1/1‑32 (MQ=255) tATGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatga > 1:1419825‑M1/1‑32 (MQ=255) aTGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgacgacatcatccaaatgat > 2:3796331‑M1/1‑31 (MQ=255) aTGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgat < 2:6257947‑M1/76‑46 (MQ=255) aTGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgat < 1:3165210‑M1/76‑46 (MQ=255) aTGCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgat > 1:3206700‑M1/1‑31 (MQ=255) gCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatca < 1:5054510‑M1/76‑48 (MQ=255) gCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatca < 1:5784824‑M1/76‑48 (MQ=255) gCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatca > 2:3122771‑M1/1‑29 (MQ=255) gCCGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatca < 1:568571‑M1/76‑48 (MQ=255) gCCGAGGACAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatca > 1:3773791‑M1/1‑29 (MQ=255) cGAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaac < 2:3561929‑M1/76‑50 (MQ=255) gAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacg < 1:7278727‑M1/76‑51 (MQ=255) gAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacg < 2:3334407‑M1/76‑51 (MQ=255) gAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacg < 1:7482749‑M1/76‑51 (MQ=255) gAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacg > 2:6028721‑M1/1‑26 (MQ=255) gAGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacg < 2:5215415‑M1/76‑51 (MQ=255) aGGTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacga > 1:2197925‑M1/1‑25 (MQ=255) gTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgaca > 2:6983690‑M1/1‑23 (MQ=255) gTCAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgaca > 2:7616207‑M1/1‑23 (MQ=255) cAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatg < 1:5372202‑M1/76‑56 (MQ=255) cAATGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatg > 1:1582576‑M1/1‑21 (MQ=255) aaTGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgg > 1:4807905‑M1/1‑20 (MQ=255) aaTGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgg < 2:1214241‑M1/76‑57 (MQ=255) aaTGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgg > 2:5303932‑M1/1‑20 (MQ=255) aTGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatggg < 1:1912383‑M1/76‑58 (MQ=255) tGACCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggc > 1:3481289‑M1/1‑18 (MQ=255) gACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTc < 2:525588/76‑1 (MQ=255) aCCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatctaaatgatcaacgacatgggcat > 1:3090463‑M1/1‑16 (MQ=255) aCCATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcat > 1:2882252‑M1/1‑16 (MQ=255) cATCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattc < 2:5626944‑M1/76‑63 (MQ=255) aTCTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattca > 2:416189‑M1/1‑13 (MQ=255) cTGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcagg < 1:6930905‑M1/76‑66 (MQ=255) tGCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggt < 1:1054230‑M1/76‑67 (MQ=255) gCCGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtg > 2:1270134‑M1/1‑9 (MQ=255) ccGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtga < 2:277484‑M1/76‑69 (MQ=255) ccGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtga > 1:3590968‑M1/1‑8 (MQ=255) cGGAAGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtgat > 1:7981028‑M1/1‑7 (MQ=255) aaGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatgga < 2:3209556‑M1/76‑73 (MQ=255) aaGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatgga > 1:4902451‑M1/1‑4 (MQ=255) aGAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaa > 1:6462244‑M1/1‑3 (MQ=255) gAtattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaag < 2:7239597‑M1/76‑75 (MQ=255) atattatcgtcgattcagatcagatcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaaga > 2:6718241‑M1/1‑1 (MQ=255) | TGAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > REL606/3145889‑3146039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |