| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,145,967 | +TAT | coding (104/1842 nt) | rpoD → | RNA polymerase sigma factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3145964 | 2 (0.010) | 345 (1.390) +TAT |
123/138 | 0.0 | 99.4% | coding (101/1842 nt) | rpoD | RNA polymerase sigma factor |
| ? | REL606 | 3145965 = | 2 (0.010) | coding (102/1842 nt) | rpoD | RNA polymerase sigma factor | |||||
Only 100 of 377 total aligned reads displayed.
GAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > REL606/3145890‑3146040 | acttcttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatt < 1:6263989‑M2/1‑1 (MQ=255)acttcttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatt < 2:6017015‑M2/1‑1 (MQ=255) ttcttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatattat > 1:3264693‑M2/74‑76 (MQ=255) ttcttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatattat < 2:1426261‑M2/3‑1 (MQ=255) ttcttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatattat < 2:663505‑M2/3‑1 (MQ=255) ttcttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatattat < 1:431411‑M2/3‑1 (MQ=255) tcttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTAtc < 1:119074‑M2/4‑1 (MQ=255) ttgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTAtcgt < 1:354883‑M2/6‑1 (MQ=255) tgtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTAtcgtc > 1:4119383‑M2/70‑76 (MQ=255) gtcacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTAtcgtcg > 2:4762901‑M2/69‑76 (MQ=255) cacccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGAt < 1:7453838‑M2/10‑1 (MQ=255) ccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtca > 1:4986051‑M2/64‑76 (MQ=255) ccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtca < 1:7994034‑M2/13‑1 (MQ=255) ccgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtca < 1:7393511‑M2/13‑1 (MQ=255) cgtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcag < 2:8015058‑M2/14‑1 (MQ=255) gtggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcaga > 2:4631894‑M2/62‑76 (MQ=255) gtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatca < 2:1751925‑M2/18‑1 (MQ=255) gtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatca > 1:3170729‑M2/59‑76 (MQ=255) gtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatca < 1:1731784‑M2/18‑1 (MQ=255) taaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatcag > 1:6820545‑M2/58‑76 (MQ=255) aaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatcaga > 1:5366932‑M2/57‑76 (MQ=255) aaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatcaga < 1:3719582‑M2/20‑1 (MQ=255) aaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatcaga > 2:311289‑M2/57‑76 (MQ=255) aaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatcaga > 1:8300580‑M2/57‑76 (MQ=255) aaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATtcagatcaga < 2:7463483‑M2/20‑1 (MQ=255) aggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTcagatcagat < 2:6738483‑M2/21‑1 (MQ=255) aggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTcagatcagat < 1:7655426‑M2/21‑1 (MQ=255) gtagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCagatcagatc > 1:5921058‑M2/55‑76 (MQ=255) gagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCg < 1:4750695‑M2/23‑1 (MQ=255) gagcaaggctatctgacctatgccgaggtcaatgaccagctgccggaagatatTATCGTCGATTCAGATCAGATCg < 2:2907153‑M2/23‑1 (MQ=255) agcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGa < 2:5253152‑M2/24‑1 (MQ=255) agcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGa < 2:5552450‑M2/24‑1 (MQ=255) gcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGaa < 2:1271164‑M2/25‑1 (MQ=255) caaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAg > 2:1006582‑M2/51‑76 (MQ=255) aaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGa < 1:8111598‑M2/27‑1 (MQ=255) aggctatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGAc < 1:5672381‑M2/28‑1 (MQ=255) ggctatctgacatatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGAca < 2:8367870‑M2/29‑1 (MQ=255) tatctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGAcatca > 1:2432573‑M2/45‑76 (MQ=255) atctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGAcatcat > 1:5502006‑M2/44‑76 (MQ=255) ctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATcc < 1:6302893‑M2/35‑1 (MQ=255) ctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATcc > 1:3048771‑M2/42‑76 (MQ=255) ctgacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATcc > 2:4553086‑M2/42‑76 (MQ=255) gacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCaa < 1:2521707‑M2/37‑1 (MQ=255) gacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCaa < 2:5149869‑M2/37‑1 (MQ=255) gacctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCaa > 1:7137850‑M2/40‑76 (MQ=255) gacctatgccgaggtcaatgaccatctgccggaagatatTATCATCGATTCAGATCAGATCGAAGACATCATCCaa > 2:2830103‑M2/40‑76 (MQ=255) cctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAAt > 2:6509312‑M2/38‑76 (MQ=255) ctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATg > 2:1921087‑M2/37‑76 (MQ=255) ctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATg < 2:6857594‑M2/40‑1 (MQ=255) ctatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATg > 2:7263130‑M2/37‑76 (MQ=255) tatgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGa > 1:1419825‑M2/36‑76 (MQ=255) atgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGAt < 2:6257947‑M2/42‑1 (MQ=255) atgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGAt < 2:4829842‑M2/42‑1 (MQ=255) atgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGAt < 2:3380318‑M2/42‑1 (MQ=255) tgccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATc < 1:1514112‑M2/43‑1 (MQ=255) gcctaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCa > 1:6142747‑M2/33‑76 (MQ=255) gccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCa < 2:3898667‑M2/44‑1 (MQ=255) gccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCa > 2:3122771‑M2/33‑76 (MQ=255) ccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCaa > 2:2970780‑M2/32‑76 (MQ=255) ccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCaa > 1:5196281‑M2/32‑76 (MQ=255) ccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCaa > 1:4897489‑M2/32‑76 (MQ=255) ccgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCaa < 1:5261492‑M2/45‑1 (MQ=255) cgaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAAc < 2:3561929‑M2/46‑1 (MQ=255) gaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACg < 1:7278727‑M2/47‑1 (MQ=255) gaggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACg < 1:2899926‑M2/47‑1 (MQ=255) ggtcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGAc < 1:2767923‑M2/49‑1 (MQ=255) tcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACAt < 1:5405239‑M2/51‑1 (MQ=255) tcaatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACAt < 1:3945257‑M2/51‑1 (MQ=255) caatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATg > 1:7907958‑M2/25‑76 (MQ=255) caatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATg > 1:6896747‑M2/25‑76 (MQ=255) aatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATgg < 2:1214241‑M2/53‑1 (MQ=255) aatgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATgg > 2:3311157‑M2/24‑76 (MQ=255) atgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATggg < 1:2170199‑M2/54‑1 (MQ=255) tgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGc < 1:4584996‑M2/55‑1 (MQ=255) tgaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGc > 1:2237600‑M2/22‑76 (MQ=255) gaccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCa > 2:2777612‑M2/21‑76 (MQ=255) accatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCAt < 2:5310969‑M2/57‑1 (MQ=255) ccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCAtt > 2:7093847‑M2/19‑76 (MQ=255) ccatctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCAtt < 1:6487324‑M2/58‑1 (MQ=255) catctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTc < 2:426482‑M2/59‑1 (MQ=255) catctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTc < 2:575023‑M2/59‑1 (MQ=255) catctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTc < 1:311475‑M2/59‑1 (MQ=255) atctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCa > 2:2709264‑M2/17‑76 (MQ=255) tctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAg < 1:1789286‑M2/61‑1 (MQ=255) tctgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAg > 1:4693834‑M2/16‑76 (MQ=255) tgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGt < 1:643747‑M2/63‑1 (MQ=255) tgccggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGt < 1:1054230‑M2/63‑1 (MQ=255) cggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAt < 1:577191‑M2/66‑1 (MQ=255) cggaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAt > 2:1566576‑M2/11‑76 (MQ=255) gaagatatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATgg < 2:7602243‑M2/68‑1 (MQ=255) atatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGCGATGgaaga > 2:5279424‑M2/5‑76 (MQ=255) tatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGgaagaa > 1:198854‑M2/4‑76 (MQ=255) tatTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGgaagaa < 1:3344913‑M2/73‑1 (MQ=255) atTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGaagaag > 2:1644016‑M2/3‑76 (MQ=255) atTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGaagaag < 1:3474097‑M2/74‑1 (MQ=255) atTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGaagaag < 2:7729260‑M2/74‑1 (MQ=255) tTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGc > 2:3209139‑M2/2‑76 (MQ=255) tTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGc < 2:2197925‑M2/75‑1 (MQ=255) tatCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCa > 1:4271444/1‑76 (MQ=255) tatCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCa > 2:2442848/1‑76 (MQ=255) | GAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > REL606/3145890‑3146040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |