| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2041060 | 177 (0.900) | 4 (0.020) | 4/136 | 15.9 | 2.7% | coding (324/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2041460 | 132 (0.740) | coding (1361/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2040979‑2041060‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatatACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTGA < REL606/2041460‑2041386 TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATA > 2:5394022/1‑76TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATA < 2:1637286/76‑1TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATA > 1:3813313/1‑76 GTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATAT > 1:5364492/1‑76 GTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATAT < 1:4760120/76‑1 tttAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATT < 2:6018372/73‑1 TTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATT < 1:1327793/76‑1 TTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATT < 2:3073888/76‑1 TTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATT < 1:797092/76‑1 TGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTA > 2:5971086/1‑76 TGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTA > 1:6946/1‑76 GAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTAT > 2:857511/1‑76 GAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTAT > 2:592701/1‑76 GAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTAT < 1:2687175/76‑1 GTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATAT < 2:5806744/76‑1 GTTCTATTTTTCTGTAATCAATATTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATT > 2:4390055/1‑76 TTTTTCTGTAATCAATATTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCT > 2:3872828/1‑76 TTTCTGTAATCAATATTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCT > 2:4506395/1‑76 CTGTAATCAATATTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTAT > 2:609485/1‑76 ATTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAG > 1:1316276/1‑76 TTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGG < 1:5351248/76‑1 TTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGG > 1:2404894/1‑76 TTATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGG > 2:2163802/1‑76 TATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGA > 1:579883/1‑76 TATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGA > 1:1402090/1‑76 TATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGA > 1:3956577/1‑76 ATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGAC > 1:3179798/1‑76 ATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGAC > 1:3943657/1‑76 ATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGAC > 1:2208516/1‑76 ATATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGAC > 1:601416/1‑76 TATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACT < 1:2549107/76‑1 TATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACT < 1:5422901/76‑1 ATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTG < 1:4991028/76‑1 ATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTG > 1:3960753/1‑76 ATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTG < 1:6040288/76‑1 ATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTG > 1:2115680/1‑76 ATACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTG > 1:181280/1‑76 TACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTGA > 1:3297310/1‑76 TACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTGA < 1:4642432/76‑1 TACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTGA < 1:2800192/76‑1 TACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTGA > 1:3866391/1‑76 TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2040979‑2041060‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatatACATCACACTAATTCGAATTATGTACAAAGAAATATTTATGACTATTATTTCTCTTATAAAAAAATAAGGACTGA < REL606/2041460‑2041386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |