| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2041060 | 177 (0.900) | 4 (0.020) | 4/136 | 15.9 | 2.7% | coding (324/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2041460 | 132 (0.740) | coding (1361/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 178 total aligned reads displayed.
GTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACAAATGAA > REL606/2040985‑2041135 | gTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTatat < 2:5806744/76‑1 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc < 2:1063231/76‑1 (MQ=255) aGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATcc > 1:663462/1‑76 (MQ=255) aGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATcc > 1:11303/1‑76 (MQ=255) gCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCca > 1:5469319/1‑76 (MQ=255) ggACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtt > 1:4995978/1‑76 (MQ=255) aCAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt < 2:1581983/76‑1 (MQ=255) aCAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt < 1:871279/76‑1 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc > 2:616015/1‑76 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc > 2:5107129/1‑76 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc < 1:5037339/76‑1 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc > 2:3882055/1‑76 (MQ=255) aGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCa > 2:3552720/1‑76 (MQ=255) aGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCa < 2:4064124/76‑1 (MQ=255) aGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCa < 1:5728832/76‑1 (MQ=255) gTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAat > 1:1174911/1‑76 (MQ=255) aaaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAatat > 1:4409842/1‑76 (MQ=255) aaaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAatat > 1:5513382/1‑76 (MQ=255) aaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATc > 2:4511283/1‑76 (MQ=255) aaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATca < 1:823360/76‑1 (MQ=255) aaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATca < 1:3655501/76‑1 (MQ=255) aTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaa < 1:1650924/76‑1 (MQ=255) aTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaa < 2:2968568/76‑1 (MQ=255) ttGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaac < 2:5569136/76‑1 (MQ=255) ttGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaac < 1:425466/76‑1 (MQ=255) ttGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaac < 1:1706332/76‑1 (MQ=255) tGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaaca < 2:1214359/76‑1 (MQ=255) gCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaacaa < 2:280885/76‑1 (MQ=255) gCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaacaa < 2:4259140/76‑1 (MQ=255) cTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACaaa < 2:5763577/76‑1 (MQ=255) cTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACaaa < 2:5469319/76‑1 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg < 1:5212480/76‑1 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg < 1:2306932/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:5053310/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 2:1819422/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 2:1771941/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 2:2270687/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:5005921/76‑1 (MQ=255) gTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAg < 1:4087829/76‑1 (MQ=255) tttttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAgg < 1:3823071/76‑1 (MQ=255) tttttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAgg < 1:3201312/76‑1 (MQ=255) tttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCg < 2:4946727/76‑1 (MQ=255) tttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCg < 1:964435/76‑1 (MQ=255) tGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTa > 1:2131938/1‑76 (MQ=255) ggTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTaa < 1:2552573/76‑1 (MQ=255) tgtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGt < 2:4678551/76‑1 (MQ=255) gtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtc < 1:4978302/76‑1 (MQ=255) tAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtcc < 2:1920495/76‑1 (MQ=255) tAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtcc > 2:3076385/1‑76 (MQ=255) aaTAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtcca > 1:4608149/1‑76 (MQ=255) aTAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccat < 2:1178442/76‑1 (MQ=255) aTAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccat < 2:4801454/76‑1 (MQ=255) tAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccatt > 2:348390/1‑76 (MQ=255) gCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcc > 1:5167041/1‑76 (MQ=255) gCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcc < 2:4126178/76‑1 (MQ=255) gCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcc > 1:6139718/1‑76 (MQ=255) ccTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcca < 2:3350791/76‑1 (MQ=255) ccTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcca > 2:3219961/1‑76 (MQ=255) ccTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcca > 1:5691986/1‑76 (MQ=255) ccTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcca > 1:3547945/1‑76 (MQ=255) cTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattccat > 1:2191214/1‑76 (MQ=255) cTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattccat > 1:2446516/1‑76 (MQ=255) tGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATa > 1:2972646/1‑76 (MQ=255) tGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATa > 2:1646888/1‑76 (MQ=255) gTTCTATTTTTCTGTAATCAATGTTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa < 1:1095378/76‑1 (MQ=255) gTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa < 1:6246116/76‑1 (MQ=255) gTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa > 1:3427639/1‑76 (MQ=255) gTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa > 1:5030381/1‑76 (MQ=255) gTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa > 1:5750113/1‑76 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa < 1:3922171/76‑1 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa > 1:6190663/1‑76 (MQ=255) tCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaaa > 2:5968606/1‑76 (MQ=255) tATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATa < 2:6238301/76‑1 (MQ=255) aTTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAg < 1:444931/76‑1 (MQ=255) aTTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAg < 1:1582248/76‑1 (MQ=255) aTTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAg > 1:6293329/1‑76 (MQ=255) aTTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAg < 1:2249391/76‑1 (MQ=255) tttttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGc > 1:3872828/1‑76 (MQ=255) tttttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGc < 1:3121073/76‑1 (MQ=255) tttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAt < 1:2008294/76‑1 (MQ=255) tttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAt > 1:1106696/1‑76 (MQ=255) ttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtg > 1:4890180/1‑76 (MQ=255) cTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtgtg < 1:3827540/76‑1 (MQ=255) cTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtgtg > 1:6010051/1‑76 (MQ=255) cTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtgtg > 1:609485/1‑76 (MQ=255) tGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGa < 2:6328009/76‑1 (MQ=255) cAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc > 2:5182349/1‑76 (MQ=255) cAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc > 1:2931130/1‑76 (MQ=255) cAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc > 1:2900496/1‑76 (MQ=255) aaTATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGca < 1:2312081/76‑1 (MQ=255) tattatATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGcaac < 2:546062/76‑1 (MQ=255) tattatATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGCTGcaac > 1:1524440/1‑76 (MQ=255) attatATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGcaaca > 1:3082953/1‑76 (MQ=255) tataTCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACaaa < 1:2785928/76‑1 (MQ=255) tataTCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACaaa > 2:6054064/1‑76 (MQ=255) atatCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACAAAt < 2:3137210/76‑1 (MQ=255) atatCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACAAAt > 1:5787445/1‑76 (MQ=255) tatCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACAAATg > 2:2345940/1‑76 (MQ=255) tatCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACAAATg < 1:1944040/76‑1 (MQ=255) tCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACAAATGaa > 1:5816283/1‑76 (MQ=255) | GTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAACAAATGAA > REL606/2040985‑2041135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |