| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 16,989 | IS150 (+) +4 bp | intergenic (‑31/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 16989 = | 0 (0.000) | 147 (0.600) | 86/150 | 1.3 | 100% | intergenic (‑31/‑499) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 666130 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 16992 | 0 (0.000) | 332 (1.360) | 121/150 | 0.0 | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 147 total aligned reads displayed.
ATAATAGCGGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/17062‑16989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT < REL606/666130‑666060 ATAATAGCGGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTG < 1:7520361/76‑1 TAATGGCGGCGGGTGCTGGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGT < 2:4491426/76‑1 AATAGCGGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTA < 2:2372358/76‑1 ATAGCGGCGGGTGCTTGAGGCTATCTGCCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTAC < 1:464142/76‑1 GCGGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGA < 1:5268900/76‑1 CGGCGGGGGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGGTAGAGAAAAAGCCCGAGGGTGTACTGAC > 2:4362091/1‑76 GGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAACCCCGAGTGTGTACTGGCC > 2:4060617/1‑76 CGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCC < 2:7123528/76‑1 GTGCTTGAGGTTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAA < 2:7390766/76‑1 GTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAA > 1:6220220/1‑76 TGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAA > 2:7106189/1‑76 TGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAA > 1:6083863/1‑76 TGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAA < 2:1759493/76‑1 CTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAG < 2:5415201/76‑1 CTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAG < 2:27899/76‑1 CTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAG > 1:6558640/1‑76 TTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGT < 2:1232169/76‑1 TTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGT > 2:2182341/1‑76 TTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGT > 1:4535271/1‑76 TGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTT > 1:2410157/1‑76 GAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTG < 1:295181/76‑1 GGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGA > 1:7180683/1‑76 CTATCTGTCTCAGGCATTAGCTGAACGGCATATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACA < 2:5916915/76‑1 CTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACA > 2:7033600/1‑76 CTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACA > 2:3270676/1‑76 CTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACA > 2:3347823/1‑76 CTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACA > 1:1614446/1‑76 CTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACA > 2:6194642/1‑76 TATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAG > 2:7030806/1‑76 TATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAG > 2:6905528/1‑76 TATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAG > 2:1517725/1‑76 TCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTT > 2:2935807/1‑76 CTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:7667295/1‑76 TGTCTCGGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAA < 2:4084432/76‑1 TGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGCCCCCAACAAGTTGGACAGTTAA > 1:1880544/1‑76 TGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAA < 2:2839056/76‑1 GTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 2:6652732/1‑76 GTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 2:6531009/76‑1 GTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA > 1:2328623/1‑76 GTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:6012679/76‑1 TCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:3653195/1‑76 TCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 2:2967524/76‑1 TCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 2:689937/1‑76 CTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:6205586/76‑1 CTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:3553637/1‑76 CTCAGGCATTAGCGGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 2:1814513/76‑1 TCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:2106777/1‑76 TCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC < 2:4263867/76‑1 TCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:2995470/1‑76 CAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG > 2:7782276/1‑76 AGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA > 1:5650666/1‑76 GGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG < 2:5172030/76‑1 GCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG < 2:1692398/76‑1 ATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA < 2:4853627/76‑1 ATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:1053991/1‑76 TTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT > 2:7832434/1‑76 TAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 1:4535076/1‑76 TAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 1:663377/1‑76 TAGCGGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 1:4987202/76‑1 AGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACGGTTAAACACGAGGCATAT > 2:6432693/1‑76 AGCGGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT < 1:3270676/76‑1 GCTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 2:4924994/76‑1 CTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCATAAAGTTGGACAGTTAAACACGAGGCATATAG < 2:6073306/76‑1 CTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:1082828/1‑76 CTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 1:1792846/1‑76 CTGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG > 2:7493051/1‑76 TGAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 2:6255115/1‑76 GAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:5324808/1‑76 GAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:1005785/1‑76 GAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 2:6514902/1‑76 GAACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 2:5989734/1‑76 AACGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC < 1:3479084/76‑1 CGGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG < 2:2848779/76‑1 GGCAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA > 2:3091085/1‑76 CAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATT > 1:6594089/1‑76 CAGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATT > 1:2112005/1‑76 AGATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTC > 2:7346062/1‑76 GATAGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCC > 1:7415309/1‑76 AGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGAT < 2:5890022/76‑1 AGAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGAT > 2:1240015/1‑76 GAGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA < 1:6914100/76‑1 aaAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT < 2:857325/74‑1 AGAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT > 2:2606464/1‑76 GAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT > 2:5942123/1‑76 GAAAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT > 2:7327482/1‑76 AAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA > 2:665771/1‑76 AAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA > 1:3191385/1‑76 AAAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA < 1:6928163/76‑1 AAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAA > 2:941850/1‑76 AAGCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAA > 2:6633182/1‑76 GCCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGACATATAGGTCTGATTCCGATATTCAATT < 2:1505120/76‑1 CCCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTG > 2:4624648/1‑76 CCCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG > 2:4999932/1‑76 CCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA < 2:3619120/76‑1 CCGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA < 1:5772342/76‑1 CGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG > 1:1744992/1‑76 CGAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG < 2:6550515/76‑1 GAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT > 2:6282202/1‑76 GAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT < 1:1703965/76‑1 GAGTGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT < 1:1574549/76‑1 ATAATAGCGGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/17062‑16989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT < REL606/666130‑666060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |