| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 16,989 | IS150 (+) +4 bp | intergenic (‑31/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 16989 = | 0 (0.000) | 147 (0.600) | 86/150 | 1.3 | 100% | intergenic (‑31/‑499) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 666130 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 16992 | 0 (0.000) | 332 (1.360) | 121/150 | 0.0 | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 483 total aligned reads displayed.
GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGC > REL606/16917‑17067 | actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTc < 1:7444374‑M1/5‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTc < 1:1574549‑M1/5‑1 (MQ=255) aCCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTt > 2:5426837‑M1/1‑75 (MQ=255) ccTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtg < 2:7467573‑M1/76‑3 (MQ=255) tccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCgg > 2:3853673‑M1/70‑76 (MQ=255) cTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgt < 1:6165912‑M1/76‑4 (MQ=255) cTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgt > 2:6237455‑M1/1‑73 (MQ=255) ttACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgta > 2:4254398‑M1/1‑72 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCttt < 1:6928163‑M1/13‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCttt > 2:665771‑M1/64‑76 (MQ=255) cAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacc > 1:5799764‑M1/1‑65 (MQ=255) cAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacc > 1:7752706‑M1/1‑65 (MQ=255) cAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacc > 2:1795737‑M1/1‑65 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTctct > 2:1240015‑M1/59‑76 (MQ=255) agagGCACTCTACATGTGTTCGGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattt > 2:2606942‑M1/1‑60 (MQ=255) gagGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccatttt < 2:6788585‑M1/76‑18 (MQ=255) gagGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccatttt < 1:7357144‑M1/76‑18 (MQ=255) agGCACTCTACATGTGTTCGGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttg < 1:1119931‑M1/76‑19 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTg > 1:2112005‑M1/54‑76 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTg < 2:7606391‑M1/23‑1 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttgg < 2:5301837‑M1/76‑23 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttgg < 1:1073010‑M1/76‑23 (MQ=255) ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttgga < 2:2127535‑M1/76‑24 (MQ=255) tctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggac < 2:1409393‑M1/76‑25 (MQ=255) ctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacg < 1:3732569‑M1/76‑26 (MQ=255) ctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacg > 2:4104922‑M1/1‑51 (MQ=255) ctACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacg < 1:3346266‑M1/76‑26 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTc > 1:1005785‑M1/48‑76 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCa > 1:350362‑M1/47‑76 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCa > 2:7363531‑M1/47‑76 (MQ=255) aCATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgat < 1:4196102‑M1/76‑28 (MQ=255) aCATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgat > 1:5929661‑M1/1‑49 (MQ=255) cATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatg < 1:5118213‑M1/76‑29 (MQ=255) aTGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatga < 2:6476711‑M1/76‑30 (MQ=255) tgtTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaat > 2:3339108‑M1/1‑44 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt > 1:17669‑M1/41‑76 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAAt < 2:4853627‑M1/36‑1 (MQ=255) ttCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatgg > 1:986487‑M1/1‑42 (MQ=255) tCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatgga > 2:1872138‑M1/1‑41 (MQ=255) cAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaa < 1:3198844‑M1/76‑37 (MQ=255) aGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaat > 1:6289793‑M1/1‑39 (MQ=255) gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaata < 1:4537784‑M1/76‑39 (MQ=255) gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaata > 2:7191853‑M1/1‑38 (MQ=255) gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaata < 2:4438823‑M1/76‑39 (MQ=255) gCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaaca < 1:2626866‑M1/76‑39 (MQ=255) cATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatag > 1:1403622‑M1/1‑37 (MQ=255) atatAGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagc < 2:3574688‑M1/76‑41 (MQ=255) tttaactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGAc > 1:2328623‑M1/32‑76 (MQ=255) tataGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcc > 1:4139713‑M1/1‑35 (MQ=255) ttaactgtccaacttgttgggggcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACa > 1:1880544‑M1/31‑76 (MQ=255) taGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccc > 1:3912515‑M1/1‑33 (MQ=255) taGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccc > 1:1299346‑M1/1‑33 (MQ=255) taGGGGGCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccc < 1:3028335‑M1/76‑44 (MQ=255) aactgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGa > 2:851477‑M1/29‑76 (MQ=255) gggggCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagccccta < 2:3011190‑M1/76‑46 (MQ=255) ctgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATa > 2:5648345‑M1/27‑76 (MQ=255) tgtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATATGCCGTTCAGCTAATGCCTGAGACAGATAg < 2:5916915‑M1/51‑1 (MQ=255) gtccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGc > 2:7087593‑M1/25‑76 (MQ=255) tccaactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGcc > 1:7180683‑M1/24‑76 (MQ=255) gCCTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat > 2:3684737‑M1/1‑27 (MQ=255) caactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTTCCGTTCAGCTAATGCCTGAGACAGATAGCCTc < 1:5573142‑M1/55‑1 (MQ=255) cTCGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgt > 1:5330106‑M1/1‑25 (MQ=255) aactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCa > 1:2410157‑M1/21‑76 (MQ=255) aactttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCa > 2:2934722‑M1/21‑76 (MQ=255) cGGGTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtca < 2:3107786‑M1/76‑54 (MQ=255) actttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCaa > 2:1673962‑M1/20‑76 (MQ=255) actttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCaa > 1:680765‑M1/20‑76 (MQ=255) ctttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAg < 2:27899‑M1/58‑1 (MQ=255) ctttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAg > 1:6558640‑M1/19‑76 (MQ=255) ctttttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAg > 2:6617392‑M1/19‑76 (MQ=255) ggTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaa > 1:6038353‑M1/1‑21 (MQ=255) ggTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaa < 1:2695179‑M1/76‑56 (MQ=255) ggTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaa < 1:6697569‑M1/76‑56 (MQ=255) gtagataGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaag < 2:6947902‑M1/73‑57 (MQ=255) gTTGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaag < 2:6322774‑M1/76‑57 (MQ=255) ttggggtcagtacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCCAGCAcc < 1:2028267‑M1/62‑1 (MQ=255) tGATAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagcc < 1:4361605‑M1/76‑59 (MQ=255) aTAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaa > 1:5243166‑M1/1‑16 (MQ=255) tAGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaa < 2:5119478‑M1/76‑62 (MQ=255) aGTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa > 2:7768415‑M1/1‑14 (MQ=255) gTAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaat < 1:2767093‑M1/76‑64 (MQ=255) tAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaata > 1:254928‑M1/1‑12 (MQ=255) tAAAATATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaata < 1:5646872‑M1/76‑65 (MQ=255) aaaTATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacc > 1:4938060‑M1/1‑10 (MQ=255) aaTATCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccc < 1:862325‑M1/76‑68 (MQ=255) tacaCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCtatt < 2:2372358‑M1/72‑1 (MQ=255) tCACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttt < 1:6399341‑M1/76‑72 (MQ=255) cACTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg > 1:4765284‑M1/1‑4 (MQ=255) aCTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttga < 1:2225289‑M1/76‑74 (MQ=255) aCTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttga > 1:2884009‑M1/1‑3 (MQ=255) aCTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttga > 1:6982026‑M1/1‑3 (MQ=255) aCTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttga < 1:4680370‑M1/76‑74 (MQ=255) aCTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgacaaagccaaaatacccttttga < 1:1640064‑M1/76‑74 (MQ=255) cTtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaa > 2:961279‑M1/1‑2 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaa > 2:6093842‑M1/1‑1 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaa < 2:6033571‑M1/76‑76 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaa > 2:4998989‑M1/1‑1 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaa < 2:4684103‑M1/76‑76 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaa < 2:3981114‑M1/76‑76 (MQ=255) ttgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaa < 2:1504728‑M1/76‑76 (MQ=255) | GACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGC > REL606/16917‑17067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |