| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 16,989 | IS150 (+) +4 bp | intergenic (‑31/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 16989 = | 0 (0.000) | 147 (0.600) | 86/150 | 1.3 | 100% | intergenic (‑31/‑499) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 666130 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 16992 | 0 (0.000) | 332 (1.360) | 121/150 | 0.0 | 100% | intergenic (‑34/‑496) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 332 total aligned reads displayed.
ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16918‑16992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA < REL606/2775877‑2775803 CCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTG < 2:4175461/76‑1 CCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTG < 2:7467573/76‑1 CTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGT < 1:6165912/76‑1 TTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTA > 2:4254398/1‑76 TACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTAC > 1:4314266/1‑76 ACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACT < 1:5214893/76‑1 ACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACT < 1:2384885/76‑1 CGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTG < 1:1395137/76‑1 TCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCAC > 2:1845371/1‑76 TCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCAC > 1:6906386/1‑76 AGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCC < 1:723812/76‑1 AGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCC < 1:6974839/76‑1 AGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCC > 1:5079249/1‑76 GTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCA < 1:2260689/76‑1 TAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCAT > 1:2493199/1‑76 TAAGAGGCACGCGACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCAT < 2:3934586/76‑1 AAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATT > 2:6262930/1‑76 AGAGGCACTCTACATGTGTTCGGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTT > 2:2606942/1‑76 AGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTT < 2:5396973/76‑1 GAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTT < 2:6788585/76‑1 AGGCACTCTACATGTGTTCGGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTG < 1:1119931/76‑1 CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACG < 1:3346266/76‑1 CTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACG < 2:3736482/76‑1 TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGA < 1:6023100/76‑1 TACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGA > 2:7766599/1‑76 ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGAT > 1:5929661/1‑76 ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGAT > 1:5431101/1‑76 ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGAT < 1:4196102/76‑1 ACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGAT < 2:4932604/76‑1 CATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATG < 1:7397124/76‑1 ATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGA > 1:4140506/1‑76 TGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAA < 2:6164264/76‑1 GTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAA < 2:5679125/76‑1 TGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAAT > 2:3339108/1‑76 GTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATG > 2:2682475/1‑76 GTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATG > 2:6659236/1‑76 gTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGG < 2:408004/75‑1 TTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGG > 2:1955842/1‑76 TTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGG > 1:986487/1‑76 CAGCATATAGGTGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 2:4643999/76‑1 CAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 2:528735/76‑1 AGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 1:1030302/76‑1 AGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 1:2708975/76‑1 AGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 2:208253/76‑1 AGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 1:6289793/1‑76 GCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:2626865/76‑1 GCATATAGGGGGCATCGGGTTGATAGTAAAATATCGCTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:1447460/76‑1 CATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 2:3643172/76‑1 CATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:1862762/76‑1 ATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 2:756786/1‑76 ATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 2:3574688/76‑1 ATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC > 1:2092167/1‑76 ATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 2:6450006/1‑76 ATAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 1:7533705/1‑76 TAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC < 1:3028335/76‑1 TAGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCC > 1:3912515/1‑76 AGGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT > 1:1754685/1‑76 GGGGGCCTCGGGTTGATGGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 2:1395213/76‑1 GGGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 2:3011190/76‑1 GGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 2:7241103/76‑1 GGGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA < 2:1562145/76‑1 GGGCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT < 1:265211/76‑1 GCCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 2:2385262/76‑1 CCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG > 1:527297/1‑76 CCTCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG < 1:6789722/76‑1 TCGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTC < 1:2220463/76‑1 CGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA < 2:3107786/76‑1 CGGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA < 1:5836966/76‑1 GGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA < 1:4082724/76‑1 GGGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA > 2:6984859/1‑76 GGTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA < 1:6697569/76‑1 GTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAG < 1:1097809/76‑1 GTTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAG > 1:4782597/1‑76 TTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC > 2:847257/1‑76 TTGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC > 1:1572619/1‑76 TGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC > 1:7764456/1‑76 TGATAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC > 1:4763858/1‑76 TAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA < 1:1231761/76‑1 TAGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAA < 2:5119478/76‑1 AGTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA < 1:2006911/76‑1 GTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT < 1:3491299/76‑1 GTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT < 1:2767093/76‑1 GTAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT > 2:4717638/1‑76 TAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA < 1:5646872/76‑1 TAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA < 1:1435430/76‑1 TAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA > 1:254928/1‑76 TAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA < 1:4519844/76‑1 TAAAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA > 2:1183013/1‑76 AAATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC < 1:3774109/76‑1 AATATCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCC < 1:862325/76‑1 TCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTT < 1:3240237/76‑1 TCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTT > 2:5511604/1‑76 TCACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTT < 1:6399341/76‑1 CACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG < 1:7058576/76‑1 ACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA > 1:2884009/1‑76 ACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA < 1:4680370/76‑1 ACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA < 1:5582114/76‑1 ACTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA < 1:648179/76‑1 CTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA > 2:961279/1‑76 TTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA < 2:6033571/76‑1 ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/16918‑16992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA < REL606/2775877‑2775803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |