| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 3,570,938 | IS150 (+) +4 bp | coding (139‑142/435 nt) | uspA → | universal stress global response regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3570938 = | 3 (0.010) | 296 (1.230) | 116/148 | 0.1 | 98.9% | coding (139/435 nt) | uspA | universal stress global response regulator |
| ? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 3570941 | 3 (0.010) | 371 (1.520) | 119/150 | 0.1 | 99.2% | coding (142/435 nt) | uspA | universal stress global response regulator |
| ? | REL606 | 3893554 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
Only 100 of 649 total aligned reads displayed.
AAAGCAGTCTCTATGGCTCGCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTGACCG > REL606/3570863‑3571013 | tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacat < 2:5311602‑M1/1‑1 (MQ=255)tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacat < 1:4505545‑M1/1‑1 (MQ=255)aaaGCAGTCTCTATGGCTCCCCCCCCCAATGCGAAAAATTCTCTTATCCACGTAGATGTAAAATAATCTGATCtat > 1:4808076/1‑76 (MQ=255) ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacata < 2:5877242‑M1/2‑1 (MQ=255) aaGCAGTCTCTATGGCTCCCCCCCCCAAAGCGAAAGATTCTCTGATCCACGTAGATGTAAACTACTCTCACCtata > 1:1268989/1‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacataca < 1:3562108‑M1/4‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTacac > 2:758020‑M1/72‑76 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTacac < 1:1685348‑M1/5‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTacac > 1:767481‑M1/72‑76 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTacac < 1:3906805‑M1/5‑1 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACAcc > 2:7851884‑M1/71‑76 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACAcc > 2:3629413‑M1/71‑76 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACAcc > 1:3111292‑M1/71‑76 (MQ=255) tctATGGCTCGCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtact < 2:3808153‑M1/76‑7 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGc < 2:6805115‑M1/10‑1 (MQ=255) ctATGGCTCGCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactg < 2:2435086‑M1/76‑8 (MQ=255) tATGGCTCGCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgc < 1:285344‑M1/76‑9 (MQ=255) tGGCTCGCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcac < 1:4368933‑M1/76‑11 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTAt > 1:1890993‑M1/63‑76 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTAtt > 2:5036943‑M1/62‑76 (MQ=255) gCTCGCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcaccc < 2:2647005‑M1/76‑13 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTg < 2:2148587‑M1/16‑1 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTg > 1:4123426‑M1/61‑76 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGAt > 2:4932646‑M1/59‑76 (MQ=255) gCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattt > 2:749928‑M1/1‑60 (MQ=255) ccTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgt > 2:4291039‑M1/1‑57 (MQ=255) cTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgtt > 1:5135558‑M1/1‑56 (MQ=255) cTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgtt < 1:5642230‑M1/76‑21 (MQ=255) tACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttg > 1:7320582‑M1/1‑55 (MQ=255) tACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttg > 2:6946483‑M1/1‑55 (MQ=255) cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCt < 2:4474003‑M1/26‑1 (MQ=255) aCAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttgg < 2:2895212‑M1/76‑23 (MQ=255) aaTGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggac > 2:400335‑M1/1‑52 (MQ=255) aTGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacg < 2:5496078‑M1/76‑26 (MQ=255) tGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacga < 2:6149907‑M1/76‑27 (MQ=255) tGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacga > 2:328380‑M1/1‑50 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGt > 1:5954886‑M1/47‑76 (MQ=255) gCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgat > 2:4733229‑M1/1‑49 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTg > 1:6496120‑M1/46‑76 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGa < 1:7230678‑M1/32‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGa < 1:5391967‑M1/32‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGa < 1:3483397‑M1/32‑1 (MQ=255) cGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatg < 1:5502188‑M1/76‑29 (MQ=255) tttCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatgg > 1:7534462‑M1/1‑42 (MQ=255) ttCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatgga > 2:6608917‑M1/1‑41 (MQ=255) ttCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatgga < 1:5257595‑M1/76‑36 (MQ=255) tctcTGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaa < 2:1728072‑M1/76‑37 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGaa > 1:2050033‑M1/36‑76 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGaa > 1:3674841‑M1/36‑76 (MQ=255) tctGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaata > 1:7811704‑M1/1‑38 (MQ=255) tctGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaata > 2:6002317‑M1/1‑38 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGaaa > 2:1498443‑M1/35‑76 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGaaa > 2:6314164‑M1/35‑76 (MQ=255) tgtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAAc < 2:6562153‑M1/43‑1 (MQ=255) ctGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatag < 1:3753059‑M1/76‑40 (MQ=255) tGATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagc > 1:3236993‑M1/1‑36 (MQ=255) gtttaactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACg < 1:2354721‑M1/44‑1 (MQ=255) gATCCACGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcc > 1:1603993‑M1/1‑35 (MQ=255) taactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCAt < 2:1950125‑M1/47‑1 (MQ=255) taactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCAt < 2:5181723‑M1/47‑1 (MQ=255) taactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCAt < 1:4894697‑M1/47‑1 (MQ=255) aactgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCAtc > 1:6619596‑M1/29‑76 (MQ=255) aCGTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaa < 1:788825‑M1/76‑47 (MQ=255) tgtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCa < 1:4262457‑M1/51‑1 (MQ=255) gtccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCag < 1:2166981‑M1/52‑1 (MQ=255) gTAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaata < 1:95151‑M1/76‑49 (MQ=255) tAGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat > 1:6417827‑M1/1‑27 (MQ=255) ccaactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCagaa > 2:3963319‑M1/23‑76 (MQ=255) aGATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatg < 1:5030519‑M1/76‑51 (MQ=255) gATGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgt < 2:4579696‑M1/76‑52 (MQ=255) caactttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCagaag > 2:1102291‑M1/22‑76 (MQ=255) aTGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtc > 2:7333676‑M1/1‑24 (MQ=255) tGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtca > 1:5827339‑M1/1‑23 (MQ=255) tGTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtca < 2:6710918‑M1/76‑54 (MQ=255) gTAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaa < 1:4664504‑M1/76‑55 (MQ=255) ctttttggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAgaga > 1:151495‑M1/19‑76 (MQ=255) tAAACTACTCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaa > 1:1040886‑M1/1‑21 (MQ=255) tggggtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACAcat < 1:6702092‑M1/63‑1 (MQ=255) tactCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaa < 2:4097748‑M1/76‑61 (MQ=255) actCTGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaa < 1:615308‑M1/76‑62 (MQ=255) ctctGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa > 2:5711541‑M1/1‑14 (MQ=255) gtcagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATg > 1:6295972‑M1/10‑76 (MQ=255) tGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatac < 2:1199414‑M1/76‑66 (MQ=255) tGACCTATACAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatac > 1:7053787‑M1/1‑11 (MQ=255) cagtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATgcg > 1:2703511‑M1/8‑76 (MQ=255) agtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATgcgc < 1:2937532‑M1/70‑1 (MQ=255) agtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATgcgc > 2:7251326‑M1/7‑76 (MQ=255) gtacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCt < 1:1154840‑M1/71‑1 (MQ=255) aagtatacatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccc > 2:7731772‑M1/4‑9 (MQ=255) tacaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTg > 2:2325706‑M1/5‑76 (MQ=255) acaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTGa < 1:626481‑M1/73‑1 (MQ=255) acaTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTGa < 2:3191972‑M1/73‑1 (MQ=255) tataCAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttt > 1:6875892‑M1/1‑6 (MQ=255) tataCAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttt > 2:1338171‑M1/1‑6 (MQ=255) caTACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTGAc < 1:4065489‑M1/74‑1 (MQ=255) ataCAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttt < 1:1363267‑M1/76‑72 (MQ=255) ataCAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttt < 1:3337028‑M1/76‑72 (MQ=255) taCAtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg < 2:3371045‑M1/76‑73 (MQ=255) taCACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTGACCg > 2:1594409/1‑76 (MQ=255) taCACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTGACCg > 2:7087572/1‑76 (MQ=255) | AAAGCAGTCTCTATGGCTCGCCCCTACAATGCGAAAGTTTCTCTGATCCACGTAGATGTAAACTACTCTGACCTATACACCGGGCTTATTGATGTGAATCTGGGTGATATGCAGAAACGCATCTCAGAAGAGACACATCATGCGCTGACCG > REL606/3570863‑3571013 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |