| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 664687 | 0 (0.000) | 121 (0.790) | 71/144 | 0.9 | 98.8% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
| ? | REL606 | 666134 = | 3 (0.020) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 | |||||
Only 100 of 131 total aligned reads displayed.
GCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA > REL606/664612‑664762 | gctgctgctGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 2:4744518‑M1/76‑1 (MQ=255)gctgctgctGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 2:4589098‑M1/76‑1 (MQ=255)gctgctgctGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTT < 2:4166492‑M1/76‑1 (MQ=255) tgctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTca < 1:3528374‑M1/76‑3 (MQ=255) ctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg > 1:3018164‑M1/1‑72 (MQ=255) tgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcaggg > 2:2310564‑M1/1‑71 (MQ=255) gctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggc > 1:1819955‑M1/1‑70 (MQ=255) tgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctt > 2:350078‑M1/1‑68 (MQ=255) tgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctt < 2:2554431‑M1/76‑9 (MQ=255) tgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGATTcagggcat > 2:2556206‑M1/1‑68 (MQ=255) gACCTCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcttt < 1:669167‑M1/76‑10 (MQ=255) gACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcttt > 2:2791130‑M1/1‑67 (MQ=255) gACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGATTcagggcttt > 1:1898903‑M1/1‑67 (MQ=255) ccgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcttttt < 1:2942690‑M1/76‑12 (MQ=255) ccgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcttttt < 2:4011415‑M1/76‑12 (MQ=255) ccgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcttttt < 1:1154933‑M1/76‑12 (MQ=255) cgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttc < 2:4964615‑M1/76‑13 (MQ=255) cgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttc > 1:4953717‑M1/1‑64 (MQ=255) cgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttc < 2:1632194‑M1/76‑13 (MQ=255) ccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcac > 2:2389182‑M1/1‑62 (MQ=255) ccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcac < 2:909794‑M1/76‑15 (MQ=255) cgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacg < 1:4253187‑M1/76‑16 (MQ=255) cgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacg < 1:2935096‑M1/76‑16 (MQ=255) cgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacg < 1:323170‑M1/76‑16 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga > 2:3744441‑M1/1‑60 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGTCCGACACGCTCCAGCAGTTTcagggcttttttacgagc > 1:3621281‑M1/1‑58 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:1171422‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:312801‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc > 1:1624335‑M1/1‑58 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc > 1:1741186‑M1/1‑58 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc > 2:3285890‑M1/1‑57 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc < 2:3621546‑M1/76‑20 (MQ=255) aGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccg > 2:3608122‑M1/1‑56 (MQ=255) gcgcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgc > 2:551311‑M1/1‑52 (MQ=255) cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgcttta > 2:166380‑M1/1‑48 (MQ=255) cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgcttta > 2:3327379‑M1/1‑48 (MQ=255) cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgcttta > 1:849182‑M1/1‑48 (MQ=255) cGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgcttta > 2:4331565‑M1/1‑48 (MQ=255) ggAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttat > 2:2523935‑M1/1‑47 (MQ=255) ggAAACTTATGGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggttttttcacgagccggcgctttat < 2:4678186‑M1/76‑30 (MQ=255) ggAAACTTATGGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttat < 2:2915806‑M1/76‑30 (MQ=255) ggAAACTTATGGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttat < 2:4701810‑M1/76‑30 (MQ=255) gAAACTTATGGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatc < 2:835316‑M1/76‑31 (MQ=255) aaaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcg > 2:4286453‑M1/1‑45 (MQ=255) aaaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcg < 2:3928377‑M1/76‑32 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgc > 2:2717819‑M1/1‑44 (MQ=255) aaCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgc > 2:3947423‑M1/1‑44 (MQ=255) aCTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcg > 2:4599510‑M1/1‑43 (MQ=255) ttATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtt > 1:971397‑M1/1‑41 (MQ=255) ataTGGGCGTGGGCAGAAACCCCGACATGCTCAAGCAGTTTcggggctttttcacgagccggcgctttatcgcgtt < 2:4960158‑M1/75‑36 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgttt > 1:1504065‑M1/1‑40 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgttt > 1:3508830‑M1/1‑40 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgttt > 2:540793‑M1/1‑40 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgttt > 1:2244047‑M1/1‑40 (MQ=255) tATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgttt > 1:3035990‑M1/1‑40 (MQ=255) aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgttta < 1:3347639‑M1/76‑38 (MQ=255) ttGGCGTGAGCAGAAACCCCGACACGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaa < 2:4196878‑M1/76‑39 (MQ=255) gCGTGAGCAGAAAGCCCGACCCGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagca < 2:4484062‑M1/76‑42 (MQ=255) cGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcac > 2:2305094‑M1/1‑34 (MQ=255) gggagaagAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcact < 2:276757‑M1/74‑44 (MQ=255) gTGAGCAGAAAGCCCGACCCGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcact < 1:619859‑M1/76‑44 (MQ=255) gTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcact > 1:3815820‑M1/1‑33 (MQ=255) tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactt < 1:976341‑M1/76‑45 (MQ=255) ggaGCAGAAGGCCCGACACGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactt < 1:995379‑M1/75‑45 (MQ=255) gAGCAGAAAGCCCGACCCGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcacttt < 2:1295603‑M1/76‑46 (MQ=255) gAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggttttttcaggagccggcgctttatcgcgtttaagcacttt < 2:2110619‑M1/76‑46 (MQ=255) agaagaaAGCCCGACACGCTCCAGCAGTTTcagggtttttccaggagccggcgctttatcgcgtttaagcactttc < 2:2969467‑M1/73‑47 (MQ=255) gCAAAAAGCCCGACACGCTCCAGCAGTTTcaggtctttttcacgagccggcgctttatcgcgtttaagcactttca < 2:719560‑M1/76‑48 (MQ=255) gCAAAAAGCCCGACACGCCCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttca < 1:4564008‑M1/76‑48 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacc > 2:3766009‑M1/1‑27 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacc > 2:931573‑M1/1‑27 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacc > 1:4626949‑M1/1‑27 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacc > 2:2199437‑M1/1‑27 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacc > 1:1898064‑M1/1‑27 (MQ=255) gAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacct > 1:2533816‑M1/1‑26 (MQ=255) gAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacct > 1:1776359‑M1/1‑26 (MQ=255) aaaacCCCGACACGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacct < 1:2251004‑M1/75‑51 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctg > 1:1195412‑M1/1‑25 (MQ=255) ccGACCCGCTCCAGCAGTTTcagggttttttcaggagccggcgctttatcgcgtttaagcactttcacctgcgcca < 2:1042543‑M1/76‑57 (MQ=255) ccGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgcca > 1:2442817‑M1/1‑20 (MQ=255) cGACACGCTCCAGCATTTTcagggtttttgcaggagccggcgctttatcgcgtttaagcactttcacctgcgccag < 1:2442605‑M1/76‑58 (MQ=255) cGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccag > 2:3464796‑M1/1‑19 (MQ=255) cccgcCCCAGCAGTTTcagtgtttttccgcgagccggcgctttatcgcctttaagcactttcacctgcgccagggt < 1:4493067‑M1/74‑61 (MQ=255) acGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtc < 2:4607451‑M1/76‑62 (MQ=255) gCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcag > 1:1586664‑M1/1‑13 (MQ=255) cTCCAGCAGTTTcagggttttttcgcgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcagg < 1:817210‑M1/76‑65 (MQ=255) cTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcagg > 2:1710302‑M1/1‑12 (MQ=255) ccgcatttTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttt < 2:4953717‑M1/74‑68 (MQ=255) cagcagTTTcgggtttttttcaggagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttt < 2:3096514‑M1/76‑68 (MQ=255) agcggTTTcggggctttttctggagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggtttt < 2:4258391‑M1/76‑69 (MQ=255) agcagTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggtttt > 2:3899330‑M1/1‑8 (MQ=255) cagTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcg < 1:5002459‑M1/76‑71 (MQ=255) cagTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcagggtttcg > 2:3956502‑M1/1‑6 (MQ=255) gTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgat > 2:1444214‑M1/1‑4 (MQ=255) gTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgat > 1:1393548‑M1/1‑4 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:893817‑M1/1‑3 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:1172742‑M1/1‑3 (MQ=255) ttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa > 2:3950162‑M1/1‑2 (MQ=255) tcagtgtttttgcgcgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataat < 1:657688‑M1/76‑76 (MQ=255) tcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataat > 1:3361820‑M1/1‑1 (MQ=255) | GCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA > REL606/664612‑664762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |