| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 664687 | 0 (0.000) | 121 (0.790) | 71/144 | 0.9 | 98.8% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
| ? | REL606 | 666134 = | 3 (0.020) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 | |||||
Only 100 of 133 total aligned reads displayed.
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATC > REL606/666060‑666209 | tgctgctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCa < 1:3528374‑M2/2‑1 (MQ=255)tgctgctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCa < 2:1642257‑M2/2‑1 (MQ=255) gctgctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAg < 2:4005408‑M2/3‑1 (MQ=255) ctgctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAgg > 1:3018164‑M2/73‑76 (MQ=255) tgctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAggg > 2:2310564‑M2/72‑76 (MQ=255) gctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGc > 1:1819955‑M2/71‑76 (MQ=255) gctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGc < 1:3435245‑M2/6‑1 (MQ=255) tgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCtt > 2:350078‑M2/69‑76 (MQ=255) tgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCtt < 2:2554431‑M2/8‑1 (MQ=255) tgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagattCAGggcat > 2:2556206‑M2/69‑74 (MQ=255) gacctccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttt < 1:669167‑M2/9‑1 (MQ=255) gaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttt > 2:2791130‑M2/68‑76 (MQ=255) gaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttt < 2:4220113‑M2/9‑1 (MQ=255) gaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagattCAGGGCttt > 1:1898903‑M2/68‑76 (MQ=255) ccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttttt < 2:4011415‑M2/11‑1 (MQ=255) ccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttttt < 1:1154933‑M2/11‑1 (MQ=255) cgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTc > 1:4953717‑M2/65‑76 (MQ=255) cgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTc < 2:4964615‑M2/12‑1 (MQ=255) cgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTc < 2:1632194‑M2/12‑1 (MQ=255) ccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCAc > 2:2389182‑M2/63‑76 (MQ=255) ccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCAc < 1:2961106‑M2/14‑1 (MQ=255) ccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCAc < 2:909794‑M2/14‑1 (MQ=255) cggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACg < 1:2935096‑M2/15‑1 (MQ=255) cggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACg < 1:323170‑M2/15‑1 (MQ=255) cggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACg < 1:4253187‑M2/15‑1 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa > 2:3744441‑M2/61‑76 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagtccgacacgctccagcagtttCAGGGCTTTTTTACGAGc > 1:3621281‑M2/59‑76 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:1171422‑M2/18‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc > 1:4060784‑M2/59‑76 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc > 1:1741186‑M2/59‑76 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc > 1:1624335‑M2/59‑76 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc < 2:3621546‑M2/19‑1 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc > 2:3285890‑M2/58‑76 (MQ=255) agctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCg > 2:3608122‑M2/57‑76 (MQ=255) ctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGgc > 2:264626‑M2/55‑76 (MQ=255) gcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGgcgc > 2:551311‑M2/53‑76 (MQ=255) ccggaatcttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGTTTTTTCAGGAGCCGGCGCttt < 2:1091213‑M2/27‑1 (MQ=255) cggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTa > 2:166380‑M2/49‑76 (MQ=255) cggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTa > 2:3327379‑M2/49‑76 (MQ=255) cggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTa > 1:849182‑M2/49‑76 (MQ=255) ggaaacttatgggcgtgagcagaaagcccgacacgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTAt < 2:4678186‑M2/29‑1 (MQ=255) ggaaacttatgggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTAt < 2:4701810‑M2/29‑1 (MQ=255) ggaaacttatgggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTAt < 2:2915806‑M2/29‑1 (MQ=255) gaaacttatgggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATc < 2:835316‑M2/30‑1 (MQ=255) aaaacttatgggcgtgagcagaaaccccgacacgctccagcattttCAGGTCTTTTTCACGAGCCGGCGCTTTATc < 2:4434371‑M2/30‑1 (MQ=255) aaatttatgggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcg < 2:3937085‑M2/31‑1 (MQ=255) aaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcg < 2:3928377‑M2/31‑1 (MQ=255) aaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcg > 2:4286453‑M2/46‑76 (MQ=255) aacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgc > 2:3947423‑M2/45‑76 (MQ=255) aacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgc > 2:2717819‑M2/45‑76 (MQ=255) acttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgcg > 2:4599510‑M2/44‑76 (MQ=255) ttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt > 1:971397‑M2/42‑76 (MQ=255) atatgggcgtgggcagaaaccccgacatgctcaagcagtttCGGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt < 2:4960158‑M2/35‑1 (MQ=255) tattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGttt > 1:3508830‑M2/41‑76 (MQ=255) tattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGttt > 1:1504065‑M2/41‑76 (MQ=255) tattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGttt > 2:540793‑M2/41‑76 (MQ=255) tattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGttt > 1:2244047‑M2/41‑76 (MQ=255) tattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGttt > 1:3035990‑M2/41‑76 (MQ=255) attggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTa < 1:3347639‑M2/37‑1 (MQ=255) gcgtgagcagaaagcccgacccgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCa < 2:4484062‑M2/41‑1 (MQ=255) gtgagcagaaagcccgacccgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACt < 1:619859‑M2/43‑1 (MQ=255) gtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACt > 1:3815820‑M2/34‑76 (MQ=255) gggagaagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACt < 2:276757‑M2/43‑1 (MQ=255) tgagcagaaagcccgacacgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACtt < 1:976341‑M2/44‑1 (MQ=255) ggagcagaaggcccgacacgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACtt < 1:995379‑M2/44‑1 (MQ=255) gagcagaaagcccgacccgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACttt < 2:1295603‑M2/45‑1 (MQ=255) gagcagaaagcccgacacgctccagcagtttCAGGGTTTTTTCAGGAGCCGGCGCTTTATCGCGTTTAAGCACttt < 2:2110619‑M2/45‑1 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACttt < 2:1353711/76‑1 (MQ=255) agaagaaagcccgacacgctccagcagtttCAGGGTTTTTCCAGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTc < 2:2969467‑M2/46‑1 (MQ=255) gcaaaaagcccgacacgctccagcagtttCAGGTCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCa < 2:719560‑M2/47‑1 (MQ=255) gcaaaaagcccgacacgccccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCa < 1:4564008‑M2/47‑1 (MQ=255) agaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc > 1:4626949‑M2/28‑76 (MQ=255) agaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc > 2:2199437‑M2/28‑76 (MQ=255) agaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc > 2:3766009‑M2/28‑76 (MQ=255) agaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc > 1:1898064‑M2/28‑76 (MQ=255) agaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc > 2:931573‑M2/28‑76 (MQ=255) gaaagcccgacacgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCt < 2:2325081‑M2/50‑1 (MQ=255) gaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCt > 1:1776359‑M2/27‑76 (MQ=255) gaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCt > 1:2533816‑M2/27‑76 (MQ=255) aaaaccccgacacgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCt < 1:2251004‑M2/50‑1 (MQ=255) aaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTg > 1:1195412‑M2/26‑76 (MQ=255) cccccggcccgctgcagcagtttCAGGGCTTTGTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTgcg < 1:2510314‑M2/53‑1 (MQ=255) cgacacgctccagcattttCAGGGTTTTTGCAGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAg < 1:2442605‑M2/57‑1 (MQ=255) cgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAg > 2:3464796‑M2/20‑76 (MQ=255) cccgccccagcagtttCAGTGTTTTTCCGCGAGCCGGCGCTTTATCGCCTTTAAGCACTTTCACCTGCGCCAGGGt < 1:4493067‑M2/60‑1 (MQ=255) gctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAg > 1:1586664‑M2/14‑76 (MQ=255) ctccagcagtttCAGGGTTTTTTCGCGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAgg < 1:817210‑M2/64‑1 (MQ=255) ccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGtt > 2:4670689‑M2/11‑76 (MQ=255) ccgcattttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGttt < 2:4953717‑M2/67‑1 (MQ=255) cagcagtttCGGGTTTTTTTCAGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGttt < 2:3096514‑M2/67‑1 (MQ=255) cagcagtttCGGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGttt < 1:3210028‑M2/67‑1 (MQ=255) agcggtttCGGGGCTTTTTCTGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGtttt < 2:4258391‑M2/68‑1 (MQ=255) cattttCAGGGCTTTTTCAGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCg < 2:2144545‑M2/70‑1 (MQ=255) cagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCg < 1:5002459‑M2/70‑1 (MQ=255) cagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGGTTTCg > 2:3956502‑M2/7‑76 (MQ=255) gtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGAt > 1:1393548‑M2/5‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:1172742‑M2/4‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:893817‑M2/4‑76 (MQ=255) tCAGTGTTTTTGCGCGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAAt < 1:657688‑M2/75‑1 (MQ=255) cAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATc > 2:3823099/1‑76 (MQ=255) | ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATC > REL606/666060‑666209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |