| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4347640 = | 27 (1.250) | 22 (1.080) | 20/142 | 0.2 | 43.3% | coding (256/477 nt) | fxsA | inner membrane protein |
| ? | REL606 | = 4356083 | 32 (1.570) | coding (351/537 nt) | blc | outer membrane lipoprotein (lipocalin) | |||||
AAAATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGA > REL606/4347565‑4347715 | aaaaTGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCttt < 2:134113/76‑1 (MQ=255) agagtatccacaggtagtcgcggtccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgtt > 2:153065‑M1/75‑76 (MQ=255) agagtatccacaggtagtcgcggtccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgtt > 1:290705‑M1/75‑76 (MQ=255) aaaTGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCtttt > 1:432920/1‑76 (MQ=255) aTGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGGTTTCTGCTTttat > 1:178376/1‑76 (MQ=255) cggcggGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTAcc < 1:104946/76‑1 (MQ=255) cggGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCggg > 2:138394/1‑76 (MQ=255) gTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCtt > 1:406074/1‑76 (MQ=255) tGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGACGGTTTGCTGCTTTTATTACCGGGCttt > 2:306260/1‑76 (MQ=255) gtagtcgcggtccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCttt > 2:240069‑M1/62‑76 (MQ=255) gAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCtttt < 1:308809/76‑1 (MQ=255) gAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCtttt < 1:336686/76‑1 (MQ=255) agtcgcggtccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCttttt < 1:403870‑M1/17‑1 (MQ=255) aaaaCCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCttttt > 2:593639/1‑76 (MQ=255) tcgcggtccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCa > 2:435662‑M1/58‑76 (MQ=255) cgcggtccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCAc > 2:131692‑M1/57‑76 (MQ=255) gtccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGAc < 2:234123‑M1/24‑1 (MQ=255) aGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACGGGGCTTTTTCACCGAc < 1:524726/76‑1 (MQ=255) cggcggAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACtt < 2:580424/76‑1 (MQ=255) ccgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACtt < 1:596340‑M1/26‑1 (MQ=255) cgggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTc > 1:343928‑M1/50‑76 (MQ=255) ggccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCt > 2:271279‑M1/48‑76 (MQ=255) cggAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCt > 2:530351/1‑76 (MQ=255) gccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTc > 2:64130‑M1/47‑76 (MQ=255) ccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCg > 1:337845‑M1/46‑76 (MQ=255) ccgcaaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCg > 1:77257‑M1/46‑76 (MQ=255) agaTGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCgg > 2:248294/1‑76 (MQ=255) caaaccagcgcatggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGtc < 2:488535‑M1/34‑1 (MQ=255) ttAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGtcttct < 1:410643/76‑1 (MQ=255) tAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTg > 1:502758/1‑76 (MQ=255) gtgtTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCtttt < 1:68799/76‑1 (MQ=255) tgtTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTtta < 2:23232/76‑1 (MQ=255) tggcgttattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTttat > 2:73610‑M1/31‑76 (MQ=255) tggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTttat < 2:98472‑M1/46‑1 (MQ=255) tggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTttat < 1:274810‑M1/46‑1 (MQ=255) ggcggtattcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTttatt < 1:614746‑M1/47‑1 (MQ=255) cTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTAccgc > 2:204519/1‑76 (MQ=255) cTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTAccgc > 1:456541/1‑76 (MQ=255) attcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTAccgcc < 1:261865‑M1/53‑1 (MQ=255) ttcccgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTAccgccg > 1:595958‑M1/23‑76 (MQ=255) cgatcaagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGc < 1:164553‑M1/58‑1 (MQ=255) aTTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGc > 1:149437/1‑76 (MQ=255) ttGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCa < 1:466790/76‑1 (MQ=255) gCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCaaa > 2:113773/1‑76 (MQ=255) ccGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCaaaa > 1:258623/1‑76 (MQ=255) aagtgcaatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAg < 2:508929‑M1/63‑1 (MQ=255) tttGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCAt > 1:1396/1‑76 (MQ=255) aatgacgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTg > 2:104733‑M1/8‑76 (MQ=255) ctgctTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGa > 1:658530/1‑76 (MQ=255) tgctTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGAc > 2:478960/1‑76 (MQ=255) acgTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAg < 1:204690‑M1/73‑1 (MQ=255) TTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACATTGa > 2:499704‑M1/1‑76 (MQ=255) TTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGa < 2:490138‑M1/76‑1 (MQ=255) | AAAATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGGGCTTTTTCACCGACTTCCTCGGTCTTCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGA > REL606/4347565‑4347715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |