| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 68 [1] | [3] 69 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 1 (0.020) | 49 (1.410) | 38/104 | 0.0 | 97.3% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 2 (0.060) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
CATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2100211‑2100307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAT > REL606/2122454‑2122525 CATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTC > 2:368455/1‑76 CCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGCACCACCTCCTTAGCCTGTGTAATCTCCCT < 2:1600177/76‑1 GTTTCGCTNAAAAACATAANCCATAAAATGCTAGCTGTACCANGAACCACCTCCTTAGCCTGTGTAATCTCCCTTA < 2:1359527/76‑1 GTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTA > 1:627987/1‑76 TTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTAC > 2:848714/1‑76 TTCGCTGAAAAACATAACCCATAAAATACTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCTCATACA > 1:1593745/1‑76 TGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGC > 1:879300/1‑76 TGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGACTCTGCAATCTCCCTTACACGGGC > 1:1519561/1‑76 GAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCT > 2:656477/1‑76 GAAAAACATAACCCATAAAATGCTAGCCGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCT < 2:1425612/76‑1 AAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTT > 2:622489/1‑76 AACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTTTTTTTTT > 1:772888/1‑76 AACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTT > 2:983724/1‑76 AACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTT < 1:656477/76‑1 AACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTT > 2:424067/1‑76 ACCCATAAANTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTA > 1:39867/1‑76 ACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTA < 1:1245530/76‑1 CCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATG < 1:646985/76‑1 AAAATGCTAGCTGTACCAGGAACCACCTCTTTAGCCTGTGTAATCTCCCTTACACGGNCTTATTTTTTTATGCATA < 1:1546616/76‑1 AAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATA > 2:155322/1‑76 AAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACGCGGGCTTATATTTTTATGCATAA > 1:1395293/1‑76 AAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAA < 1:428198/76‑1 AAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAA > 2:1220791/1‑76 TGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCC < 2:940949/76‑1 CTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCT > 1:977308/1‑76 CTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCT > 2:765909/1‑76 TAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTA > 2:600777/1‑76 AGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTAT > 2:1216101/1‑76 AGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTAT > 2:554102/1‑76 CTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCT < 2:291175/76‑1 CTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCT < 2:1191827/76‑1 CTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTGTATGCATAAGCCCTATCT < 1:117910/76‑1 TGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCGTATTTTTTGATGTATAAGTCCTATCTC > 1:1468751/1‑76 GTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCTTAAG‑CCTATCTCcg > 2:1577778/1‑74 CCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGT < 1:811367/76‑1 CAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTA < 1:848714/76‑1 CAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTA < 2:20181/76‑1 AGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAA > 2:700865/1‑76 AGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAA > 1:252500/1‑76 GGAACCACCTCCTTTGCCTGTATAATCTCCCTTACACGGGCTTATTTTTTTATTCATAGGCCCTATCTCTGGTAAC < 2:238937/76‑1 AACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCG < 1:1212792/76‑1 AACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCG > 2:460787/1‑76 CCACCTCCTTAGCCTGTGTAATCTCCCTTACANGGACTTATNTTTTTTTGCATAAGCCCTANCTCTGGTAACCGcc > 2:1330457/1‑74 CACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCT < 2:1446421/76‑1 ACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTT < 2:1179907/76‑1 CCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCAT > 2:36705/1‑76 TTAGCCTGTGTAATCTCCCTTACAGGGGCTTNTTTTTTTACGCATANGCCCTNTCTCTGGTAACCGGCTTCCATTG < 2:204035/76‑1 TAGCCTGTGTAATCTCCCTTACACGGGCCTATTTATTGATGCATAAGNCCTATCTCTGGTAACCGTCTTCCACTGA > 1:149259/1‑76 AGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGAC > 2:39614/1‑76 GCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACC < 1:1371681/76‑1 CTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCAC < 2:886281/76‑1 GTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAT > 2:19917/1‑76 GTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAT < 1:1441977/76‑1 GTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAT > 1:1071275/1‑76 TGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATC > 2:971189/1‑76 TGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATC > 1:1239222/1‑76 TAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGA < 1:818803/76‑1 AATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAT < 2:1436256/76‑1 ATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATA < 1:675095/76‑1 CTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGA < 1:1273005/76‑1 TCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAA < 2:884393/76‑1 CCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAT < 2:355042/76‑1 CCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAT > 2:1561822/1‑76 TTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCT > 1:914667/1‑76 ACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCC > 2:1107120/1‑76 ACGGGCTTCTTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTT > 2:400864/1‑76 GGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTACTTCAn < 1:99504/76‑2 GCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATA < 1:1154467/76‑1 GCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTCCATA < 2:1586257/76‑1 CTTATTTTTTTATGCATAAGCCCTATCTGTGGTACCCATCTTCCATTNACCACATCGATAGAATCCTCCTTCATAG > 1:146469/1‑76 CTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAG < 2:1069723/76‑1 TATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCA < 2:5922/76‑1 TATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCA < 1:1349945/76‑1 TATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCA < 2:264329/76‑1 ATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCAC > 1:994617/1‑76 ATTTTTTGATGCATAAGCCCGANNTCTGGTAACCNNCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCAC < 1:1451468/76‑1 TTTTTATGCAAAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAT > 1:1490324/1‑76 CATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2100211‑2100307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAT > REL606/2122454‑2122525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |