| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 68 [1] | [3] 69 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 1 (0.020) | 49 (1.410) | 38/104 | 0.0 | 97.3% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 2 (0.060) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGC > REL606/2100232‑2100379 | tAACCCATAAAATGTTAGCTGTACTAGGGACNACCTCCTTAGCCTGNGTAATNTCCCTTACACGGGTTTAtttttt < 2:206213/76‑1 (MQ=255) aaCCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTTTTTTTTt > 1:772888‑M1/1‑75 (MQ=255) aaCCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTt > 2:983724‑M1/1‑75 (MQ=255) aaCCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTt < 1:656477‑M1/76‑2 (MQ=255) aaCCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTt > 2:424067‑M1/1‑75 (MQ=255) aCCCATAAANTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTta > 1:39867‑M1/1‑74 (MQ=255) aCCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTta < 1:1245530‑M1/76‑3 (MQ=255) ccATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatg < 1:646985‑M1/76‑5 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCTTTAGCCTGTGTAATCTCCCTTACACGGNCTTATTTTTTtatgcata < 1:1546616‑M1/76‑9 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcata > 2:155322‑M1/1‑68 (MQ=255) aaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACGCGGGCTTATATTTTtatgcataa > 1:1395293‑M1/1‑67 (MQ=255) aaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataa > 2:1220791‑M1/1‑67 (MQ=255) aaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataa < 1:428198‑M1/76‑10 (MQ=255) tGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcc < 2:940949‑M1/76‑13 (MQ=255) cTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccct > 1:977308‑M1/1‑62 (MQ=255) cTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccct > 2:765909‑M1/1‑62 (MQ=255) tAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcccta > 2:600777‑M1/1‑61 (MQ=255) aGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctat > 2:554102‑M1/1‑60 (MQ=255) aGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctat > 2:1216101‑M1/1‑60 (MQ=255) cTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatct < 2:1191827‑M1/76‑19 (MQ=255) cTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatct < 2:291175‑M1/76‑19 (MQ=255) cTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTGtatgcataagccctatct < 1:117910‑M1/76‑19 (MQ=255) tGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCGTATTTTTTgatgtataagtcctatctc > 1:1468751‑M1/1‑57 (MQ=255) gTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcttaagcctatctccg > 2:1577778‑M1/1‑56 (MQ=255) ccAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggt < 1:811367‑M1/76‑24 (MQ=255) cAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggta < 2:20181‑M1/76‑25 (MQ=255) cAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggta < 1:848714‑M1/76‑25 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaa > 1:252500‑M1/1‑51 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaa > 2:700865‑M1/1‑51 (MQ=255) ggAACCACCTCCTTTGCCTGTATAATCTCCCTTACACGGGCTTATTTTTTtattcataggccctatctctggtaac < 2:238937‑M1/76‑27 (MQ=255) aaCCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccg < 1:1212792‑M1/76‑29 (MQ=255) aaCCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccg > 2:460787‑M1/1‑48 (MQ=255) ccaccTCCTTAGCCTGTGTAATCTCCCTTACANGGACTTATNTTTTtttgcataagccctanctctggtaaccgcc > 2:1330457‑M1/1‑46 (MQ=255) caccTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtct < 2:1446421‑M1/76‑32 (MQ=255) accTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtctt < 2:1179907‑M1/76‑33 (MQ=255) tcctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCt < 1:1318904/76‑1 (MQ=255) cctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccat > 2:36705‑M1/1‑40 (MQ=255) ttAGCCTGTGTAATCTCCCTTACAGGGGCTTNTTTTTTtacgcatangccctntctctggtaaccggcttccattg < 2:204035‑M1/76‑39 (MQ=255) tAGCCTGTGTAATCTCCCTTACACGGGCCTATTTATTgatgcataagncctatctctggtaaccgtcttccactga > 1:149259‑M1/1‑37 (MQ=255) aGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgac > 2:39614‑M1/1‑36 (MQ=255) gCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgacc < 1:1371681‑M1/76‑42 (MQ=255) cTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccac < 2:886281‑M1/76‑44 (MQ=255) gtgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacat < 1:1441977‑M1/76‑46 (MQ=255) gtgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacat > 2:19917‑M1/1‑31 (MQ=255) gtgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacat > 1:1071275‑M1/1‑31 (MQ=255) tgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatc > 1:1239222‑M1/1‑30 (MQ=255) tgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatc > 2:971189‑M1/1‑30 (MQ=255) tAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcga < 1:818803‑M1/76‑49 (MQ=255) aaTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgat < 2:1436256‑M1/76‑50 (MQ=255) aTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgata < 1:675095‑M1/76‑51 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgataga < 1:1273005‑M1/76‑53 (MQ=255) tcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaa < 2:884393‑M1/76‑54 (MQ=255) cccTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaat > 2:1561822‑M1/1‑22 (MQ=255) cccTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaat < 2:355042‑M1/76‑55 (MQ=255) ttACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcct > 1:914667‑M1/1‑19 (MQ=255) acacGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctcc > 2:1107120‑M1/1‑17 (MQ=255) acGGGCTTCTTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctcctt > 2:400864‑M1/1‑15 (MQ=255) ggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctacttcan < 1:99504‑M1/76‑65 (MQ=255) gCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcata < 1:1154467‑M1/76‑66 (MQ=255) gCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctcctccata < 2:1586257‑M1/76‑66 (MQ=255) cTTATTTTTTtatgcataagccctatctgtggtacccatcttccattnaccacatcgatagaatcctccttcatag > 1:146469‑M1/1‑10 (MQ=255) cTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatag < 2:1069723‑M1/76‑67 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca < 2:5922‑M1/76‑69 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca < 1:1349945‑M1/76‑69 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca < 2:264329‑M1/76‑69 (MQ=255) aTTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcac > 1:994617‑M1/1‑7 (MQ=255) aTTTTTTgatgcataagcccganntctggtaaccnncttccattgaccacatcgatagaatcctccttcatagcac < 1:1451468‑M1/76‑70 (MQ=255) tttttatgcaaaagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgat > 1:1490324‑M1/1‑4 (MQ=255) | TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGC > REL606/2100232‑2100379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |