| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 68 [1] | [3] 69 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 1 (0.020) | 49 (1.410) | 38/104 | 0.0 | 97.3% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 2 (0.060) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
GCTCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAT > REL606/2122379‑2122525 | aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggctttttttttt > 1:772888‑M2/76‑76 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 2:983724‑M2/76‑76 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt < 1:656477‑M2/1‑1 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 2:424067‑M2/76‑76 (MQ=255) acccataaantgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTa > 1:39867‑M2/75‑76 (MQ=255) acccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTa < 1:1245530‑M2/2‑1 (MQ=255) ccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATg < 1:646985‑M2/4‑1 (MQ=255) aaaatgctagctgtaccaggaaccacctctttagcctgtgtaatctcccttacacggncttattttttTATGCATa < 1:1546616‑M2/8‑1 (MQ=255) aaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATa > 2:155322‑M2/69‑76 (MQ=255) aaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacgcgggcttatattttTATGCATaa > 1:1395293‑M2/68‑76 (MQ=255) aaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATaa < 1:428198‑M2/9‑1 (MQ=255) aaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATaa > 2:1220791‑M2/68‑76 (MQ=255) tgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGcc < 2:940949‑M2/12‑1 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCt > 2:765909‑M2/63‑76 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCt > 1:977308‑M2/63‑76 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa > 2:600777‑M2/62‑76 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt > 2:1216101‑M2/61‑76 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt > 2:554102‑M2/61‑76 (MQ=255) ctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtct < 2:1191827‑M2/18‑1 (MQ=255) ctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtct < 2:291175‑M2/18‑1 (MQ=255) ctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttatttttgTATGCATAAGCCCTAtct < 1:117910‑M2/18‑1 (MQ=255) tgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcgtattttttGATGTATAAGTCCTAtctc > 1:1468751‑M2/58‑76 (MQ=255) gtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCTTAAG‑CCtatctccg > 2:1577778‑M2/57‑74 (MQ=255) ccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGt < 1:811367‑M2/23‑1 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa < 1:848714‑M2/24‑1 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa < 2:20181‑M2/24‑1 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa > 2:700865‑M2/52‑76 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa > 1:252500‑M2/52‑76 (MQ=255) ggaaccacctcctttgcctgtataatctcccttacacgggcttattttttTATTCATAGGCCCTATCTCTGGTAAc < 2:238937‑M2/26‑1 (MQ=255) aaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCg < 1:1212792‑M2/28‑1 (MQ=255) aaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCg > 2:460787‑M2/49‑76 (MQ=255) ccacctccttagcctgtgtaatctcccttacanggacttatnttttTTTGCATAAGCCCTANCTCTGGTAAccgcc > 2:1330457‑M2/47‑74 (MQ=255) cacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCt < 2:1446421‑M2/31‑1 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt < 2:1179907‑M2/32‑1 (MQ=255) ccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCAt > 2:36705‑M2/41‑76 (MQ=255) ttagcctgtgtaatctcccttacaggggcttnttttttTACGCATANGCCCTNTCTCTGGTAACCGGCTTCCATTg < 2:204035‑M2/38‑1 (MQ=255) tagcctgtgtaatctcccttacacgggcctatttattGATGCATAAGNCCTATCTCTGGTAACCGTCTTCCACTGa > 1:149259‑M2/38‑76 (MQ=255) agcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGAc > 2:39614‑M2/37‑76 (MQ=255) gcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGAcc < 1:1371681‑M2/41‑1 (MQ=255) ctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACcac < 2:886281‑M2/43‑1 (MQ=255) acCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTGCATTGACcac > 1:970441/1‑76 (MQ=255) gtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAt > 2:19917‑M2/32‑76 (MQ=255) gtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAt < 1:1441977‑M2/45‑1 (MQ=255) gtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAt > 1:1071275‑M2/32‑76 (MQ=255) tgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATc > 2:971189‑M2/31‑76 (MQ=255) tgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATc > 1:1239222‑M2/31‑76 (MQ=255) taatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGa < 1:818803‑M2/48‑1 (MQ=255) aatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAt < 2:1436256‑M2/49‑1 (MQ=255) atctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATa < 1:675095‑M2/50‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:1273005‑M2/52‑1 (MQ=255) atCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa > 1:629462/1‑76 (MQ=255) tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGaa < 2:884393‑M2/53‑1 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt > 2:1561822‑M2/23‑76 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt < 2:355042‑M2/54‑1 (MQ=255) ttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcct > 1:914667‑M2/20‑76 (MQ=255) acacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcctcc > 2:1107120‑M2/18‑76 (MQ=255) acgggcttcttttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCtt > 2:400864‑M2/16‑76 (MQ=255) ggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTACTTcan < 1:99504‑M2/64‑2 (MQ=255) gcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATa < 1:1154467‑M2/65‑1 (MQ=255) gcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTCCATa < 2:1586257‑M2/65‑1 (MQ=255) gCTTATTTTTTTCTGCATAAGCCCTATCTCTGNTAGCCGTCNTCCATAGACCACATCGATANAATCCTCCTTCATa > 2:1335219/1‑76 (MQ=255) cttattttttTATGCATAAGCCCTATCTGTGGTACCCATCTTCCATTNACCACATCGATAGAATCCTCCTTCATAg > 1:146469‑M2/11‑76 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAg < 2:1069723‑M2/66‑1 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa < 2:264329‑M2/68‑1 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa < 2:5922‑M2/68‑1 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa < 1:1349945‑M2/68‑1 (MQ=255) attttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCAc > 1:994617‑M2/8‑76 (MQ=255) attttttGATGCATAAGCCCGANNTCTGGTAACCNNCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCAc < 1:1451468‑M2/69‑1 (MQ=255) ttttTATGCAAAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAt > 1:1490324‑M2/5‑76 (MQ=255) | GCTCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAT > REL606/2122379‑2122525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |