| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4194708 = | 56 (1.150) | 50 (1.040) | 41/148 | 0.2 | 52.0% | intergenic (+54/‑215) | metA/aceB | homoserine O‑succinyltransferase/malate synthase |
| ? | REL606 | = 4449216 | 37 (0.770) | coding (242/1422 nt) | treB | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component | |||||
GATAACTTGTTGATAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4194783‑4194708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAATGGCATGAGC < REL606/4449216‑4449142 GATAACTTGTTGNTAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCG > 1:14190/1‑76 ATAACTTGTTGATAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGC > 1:603742/1‑76 TAACTTGTTGATAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCG > 2:549076/1‑76 TAACTTGTTGATAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCG < 1:547932/76‑1 TTGTTGATAACAATATGTATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAA > 1:279062/1‑76 TTGTTGATAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAA < 1:837603/76‑1 TTGTTGATAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAA < 1:240649/76‑1 ctaGATAACGATANGAATAAAATTGATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACC < 1:195543/73‑1 TAACAATATGAATNAAATTTATTCACCTNCTNTGGTACGTTTCGGAAACAAAAAAGGCACCCGCGTCAACCGGACA < 2:1382351/76‑1 TAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCTCGTCAACCGGACA < 1:99843/76‑1 TAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACA > 2:730074/1‑76 TAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACA < 1:706835/76‑1 AACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAG > 2:862357/1‑76 CAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGC < 1:249881/76‑1 AATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCG > 1:74373/1‑76 ATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAG > 1:809534/1‑76 GAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGT > 2:156577/1‑76 ATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTG < 2:1035172/76‑1 ATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTG < 2:492266/76‑1 TAAAATGTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGA < 2:1489374/76‑1 AAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATA < 2:535358/76‑1 AATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAA < 1:1159729/76‑1 TATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATACAGAG < 2:1506512/76‑1 TTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCA < 2:1066011/76‑1 TCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAG < 1:802979/76‑1 TCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAG > 1:1177204/1‑76 CCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTA < 2:1214231/76‑1 CCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTA < 1:500116/76‑1 TGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAA > 1:211745/1‑76 GCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAA > 1:1211930/1‑76 GCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAA < 1:319237/76‑1 GAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAA > 1:484194/1‑76 GAGGTACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAA > 2:650161/1‑76 TACGTTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCG > 1:1063516/1‑76 TTTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGCTGATAAAGAGCAGGTANAAAAAGCCGCCCG > 2:1397222/1‑76 TTCGGAAATAAAACAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGG > 2:780956/1‑76 TTCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGG > 1:749493/1‑76 TCGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGAAAAAAAAGCCGCCCGcc > 1:1091826/1‑74 CGGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCA > 1:796337/1‑76 GGAAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAG < 2:601897/76‑1 AAATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAA < 1:170273/76‑1 ATAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATA < 2:1109907/76‑1 TAAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATAT < 2:585505/76‑1 AAAAAAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATG > 1:1149785/1‑76 AAAAAAGCCACCCGCGTCAGCCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATG < 1:947472/76‑1 AAAGGCACCCGCGTCAACCGGACAGGCGAAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAA > 2:137698/1‑76 AAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAAT < 2:1110065/76‑1 AAGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAAT < 2:74373/76‑1 AGGCACCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAATG < 1:1357828/76‑1 CCCGCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAATGGCATG < 2:954728/76‑1 CCGCGTCAACCGGACAGGCGAAGGTGGANAAAGAGCAGGGAGAAAAAACCGCCCGGCAGAATATGAAATGGCATGA < 1:137698/76‑1 GCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAATGGCATGAGC < 1:697973/76‑1 GCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAATGGCATGAGC < 1:579424/76‑1 GATAACTTGTTGATAACAATATGAATAAAATTTATTCACCTGCTGAGGTACGTTTCGGAAATAAAAAAGGCACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4194783‑4194708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGTCAACCGGACAGGCGCAGGTTGATAAAGAGCAGGTAAAAAAAGCCGCCCGGCAGAATATGAAATGGCATGAGC < REL606/4449216‑4449142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |