| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4194708 = | 56 (1.150) | 50 (1.040) | 41/148 | 0.2 | 52.0% | intergenic (+54/‑215) | metA/aceB | homoserine O‑succinyltransferase/malate synthase |
| ? | REL606 | = 4449216 | 37 (0.770) | coding (242/1422 nt) | treB | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component | |||||
TGCTCATGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGC > REL606/4449141‑4449291 | tGCTCATGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGCCg > 2:121635/1‑76 (MQ=255) gCTCATGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGc < 1:579424‑M2/76‑2 (MQ=255) gCTCATGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGc < 1:697973‑M2/76‑2 (MQ=255) tCATGCCATTTCATATTCTGCCGGGCGGTTTTTTCTCCCTGCTCTTTNTCCACCTTCGCCTGTCCGGTTGACGcgg < 1:137698‑M2/76‑4 (MQ=255) cATGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcggg < 2:954728‑M2/76‑5 (MQ=255) aTGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGTCTTTTATCAACCTGCGCCTGTCCGGTTGACGCTAtt > 2:43976/1‑76 (MQ=255) aTGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTAtt > 2:869959/1‑76 (MQ=255) gCCATTTCATATTCTGCCGGGCGGCTTCTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGATATTAg > 1:1510761/1‑76 (MQ=255) cATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgcct < 1:1357828‑M2/76‑10 (MQ=255) aTTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgcctt < 2:74373‑M2/76‑11 (MQ=255) aTTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgcctt < 2:1110065‑M2/76‑11 (MQ=255) tttCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTTCGCCTGTCCGGTTGACGcgggtgccttt > 2:137698‑M2/1‑65 (MQ=255) tCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTg < 1:1482765/76‑1 (MQ=255) cATATTCTGCCGGGCGGCTTTTTTTACCTGCTNTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCNTGa > 2:1428547/1‑76 (MQ=255) cATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgcctttttt > 1:1149785‑M2/1‑62 (MQ=255) cATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGCTGACGcgggtggctttttt < 1:947472‑M2/76‑15 (MQ=255) atatTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgcctttttta < 2:585505‑M2/76‑16 (MQ=255) atatTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGAt > 1:1188320/1‑76 (MQ=255) tatTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttat < 2:1109907‑M2/76‑17 (MQ=255) atTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAg > 2:2659/1‑76 (MQ=255) atTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAg > 1:545095/1‑76 (MQ=255) ttCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttattt < 1:170273‑M2/76‑19 (MQ=255) ttCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGt < 1:1227371/76‑1 (MQ=255) tCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGANGNTATTAGTGCTTGATAGTa > 1:956513/1‑76 (MQ=255) cTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttcc < 2:601897‑M2/76‑21 (MQ=255) cTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTaa > 2:97632/1‑76 (MQ=255) tGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccg > 1:796337‑M2/1‑55 (MQ=255) tGCCGGGCGGCTTTTTTTACCTGCTATTTATCAACCTGCCNNTGTCCGGTTGNNGTTATTAGTGCTTGATAGTAAt > 1:1375649/1‑76 (MQ=255) ggcggGCGGCTTTTTTTTCCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccga > 1:1091826‑M2/3‑54 (MQ=255) ccGGGCGGCTTTTTTTACTGGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCa < 2:1469883/76‑1 (MQ=255) ccGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaa > 1:749493‑M2/1‑53 (MQ=255) ccGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgcctgttttatttccgaa > 2:780956‑M2/1‑53 (MQ=255) cGGGCGGCTTTTTNTACCTGCTCTTTATCAGCCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaa > 2:1397222‑M2/1‑52 (MQ=255) gggCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCAcc > 1:435165/1‑76 (MQ=255) gggCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCAcc > 2:516125/1‑76 (MQ=255) gggCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCAcc > 2:861352/1‑76 (MQ=255) gggCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCAcc > 1:705135/1‑76 (MQ=255) cgtcTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCAc > 2:891507/4‑76 (MQ=255) cggcTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgta > 1:1063516‑M2/1‑48 (MQ=255) tttttttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctc > 1:484194‑M2/1‑44 (MQ=255) tttttttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctc > 2:650161‑M2/1‑44 (MQ=255) ttttttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTgg < 1:348300/76‑1 (MQ=255) ttttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagc < 1:319237‑M2/76‑36 (MQ=255) ttttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagc > 1:1211930‑M2/1‑41 (MQ=255) ttttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTg < 1:260475/76‑1 (MQ=255) tttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagca > 1:211745‑M2/1‑40 (MQ=255) tttACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGc > 2:914250/1‑76 (MQ=255) tACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcagg < 2:1214231‑M2/76‑39 (MQ=255) tACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcagg < 1:500116‑M2/76‑39 (MQ=255) ccTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAAt > 1:1081465/1‑76 (MQ=255) cTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtga > 1:1177204‑M2/1‑35 (MQ=255) cTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtga < 1:802979‑M2/76‑42 (MQ=255) tGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaa < 2:1066011‑M2/76‑43 (MQ=255) tGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATca > 1:539791/1‑76 (MQ=255) tGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATca > 1:696804/1‑76 (MQ=255) gCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTATTCACCCACGTTGGTGCCAATcac > 1:1317641/1‑76 (MQ=255) ctctTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATcacc > 2:920719/1‑76 (MQ=255) ctctTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATcacc > 2:130714/1‑76 (MQ=255) ctctGTATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaata < 2:1506512‑M2/76‑45 (MQ=255) ttATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaatt < 1:1159729‑M2/76‑49 (MQ=255) tATCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattt < 2:535358‑M2/76‑50 (MQ=255) tATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTg < 2:407260/76‑1 (MQ=255) tCAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaatacatttta < 2:1489374‑M2/76‑52 (MQ=255) cAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttat < 2:1035172‑M2/76‑53 (MQ=255) cAACCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttat < 2:492266‑M2/76‑53 (MQ=255) aCCTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattc > 2:156577‑M2/1‑22 (MQ=255) aCCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAAtt < 1:235804/76‑1 (MQ=255) cTGCGCCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcat > 1:809534‑M2/1‑20 (MQ=255) tGCGCCTGTCCGGTTGACGCTATTAGTNCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGcc > 1:1527118/1‑76 (MQ=255) gcgcCTGTCCGGTTGACGCTATTAGTGCTCGATAGTTATCACCCACGTTGGTGCCAANCACCACCTGAAATTGccc < 1:1456825/76‑1 (MQ=255) cgcCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatatt > 1:74373‑M2/1‑17 (MQ=255) gcCTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattg < 1:249881‑M2/76‑61 (MQ=255) gcCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCgg > 2:1188770/1‑76 (MQ=255) cTGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgtt > 2:862357‑M2/1‑14 (MQ=255) cTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCa > 2:725281/1‑76 (MQ=255) tGTCCGGTTGACGcgggtgccttttttgtttccgaaacgtaccanagnaggtgaataaatttnattcatattgtta < 2:1382351‑M2/76‑64 (MQ=255) tGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgtta < 1:706835‑M2/76‑64 (MQ=255) tGTCCGGTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgtta > 2:730074‑M2/1‑13 (MQ=255) tGTCCGGTTGACGagggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgtta < 1:99843‑M2/76‑64 (MQ=255) cGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGt < 1:815601/76‑1 (MQ=255) ggTTGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaatcaattttattcntatcgttatctag < 1:195543‑M2/76‑69 (MQ=255) ggTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTg < 2:1529713/76‑1 (MQ=255) gTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGa > 2:1343163/1‑76 (MQ=255) ttGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgttatcaacaa < 1:240649‑M2/76‑71 (MQ=255) ttGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgttatcaacaa < 1:837603‑M2/76‑71 (MQ=255) ttGACGcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttatacatattgttatcaacaa > 1:279062‑M2/1‑6 (MQ=255) cgcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgttatcaacaagtta > 2:549076‑M2/1‑2 (MQ=255) cgcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgttatcaacaagtta < 1:547932‑M2/76‑75 (MQ=255) cGCTATTAGTTCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAg > 1:1419623/1‑76 (MQ=255) gcgggtgccttttttatttccgaaacgtacctcagcaggtgaataaattttattcatattgttatcaacaagttat > 1:603742‑M2/1‑1 (MQ=255) | TGCTCATGCCATTTCATATTCTGCCGGGCGGCTTTTTTTACCTGCTCTTTATCAACCTGCGCCTGTCCGGTTGACGCTATTAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGC > REL606/4449141‑4449291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |