| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4194708 = | 56 (1.150) | 50 (1.040) | 41/148 | 0.2 | 52.0% | intergenic (+54/‑215) | metA/aceB | homoserine O‑succinyltransferase/malate synthase |
| ? | REL606 | = 4449216 | 37 (0.770) | coding (242/1422 nt) | treB | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component | |||||
Only 100 of 109 total aligned reads displayed.
CATGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATC > REL606/4194633‑4194783 | gctcatgccatttcatattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgc < 1:697973‑M1/1‑1 (MQ=255)gctcatgccatttcatattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgc < 1:579424‑M1/1‑1 (MQ=255)caTGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTc > 1:340328/1‑76 (MQ=255)caTGAATCCAACGCAGGATTAGTCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACGTTACCTCAGGCACCTTc < 2:240055/76‑1 (MQ=255) tcatgccatttcatattctgccgggcggttttttctccctgctctttntccaccttcgcctgtccggttgacgCgg < 1:137698‑M1/3‑1 (MQ=255) tGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCgg < 1:245354/76‑1 (MQ=255) aTCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTg < 2:714912/76‑1 (MQ=255) ccAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTCACCTCAGGCACCTTCGGGTGcc > 2:253000/1‑76 (MQ=255) catttcatattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCt < 1:1357828‑M1/9‑1 (MQ=255) atttcatattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCtt < 2:74373‑M1/10‑1 (MQ=255) tttcatattctgccgggcggctttttttacctgctctttatcaaccttcgcctgtccggttgacgCGGGTGCCttt > 2:137698‑M1/66‑76 (MQ=255) aCGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCttt < 2:1486050/76‑1 (MQ=255) cGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCtttt > 2:1013264/1‑76 (MQ=255) catattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCtttttt > 1:1149785‑M1/63‑76 (MQ=255) catattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggctgacgCGGGTGGCtttttt < 1:947472‑M1/14‑1 (MQ=255) cTGGATTAATCTTCTGTGATAGTCGATAGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCAtatttt > 1:1513785/1‑76 (MQ=255) atattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTa < 2:585505‑M1/15‑1 (MQ=255) tattctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTAt < 2:1109907‑M1/16‑1 (MQ=255) gATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTAtt < 2:148343/76‑1 (MQ=255) gATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTAtt < 2:418837/76‑1 (MQ=255) ttctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTAttt < 1:170273‑M1/18‑1 (MQ=255) aTTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTAttt < 2:127905/76‑1 (MQ=255) aTTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCNTACCTCAGGCACCTTCGGGTGCCTTTTTTAttt < 2:1301114/76‑1 (MQ=255) tAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCtttttttttttc > 1:125027/1‑74 (MQ=255) tAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTcc > 2:1074611/1‑76 (MQ=255) ctgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTcc < 2:601897‑M1/20‑1 (MQ=255) tgccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCg > 1:796337‑M1/56‑76 (MQ=255) ggcgggcggcttttttttcctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGa > 1:1091826‑M1/55‑76 (MQ=255) tcttctGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGaa < 1:1082271/76‑1 (MQ=255) ccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGaa > 1:749493‑M1/54‑76 (MQ=255) ccgggcggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTGTTTTATTTCCGaa > 2:780956‑M1/54‑76 (MQ=255) nttctGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTTTTTTCGaaa > 1:1142626/2‑76 (MQ=255) cgggcggctttttntacctgctctttatcagcctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGaaa > 2:1397222‑M1/53‑76 (MQ=255) ttctGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAAc > 1:1141922/1‑76 (MQ=255) tctGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTTTTTCCGAAACg > 1:321777/1‑76 (MQ=255) tctGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACg > 2:1199734/1‑76 (MQ=255) tctGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGGGGCTTTTTTTTTTTCTAAACg > 1:541304/1‑76 (MQ=255) ctGTGATAGTCGNTCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGt > 1:21373/1‑76 (MQ=255) tgtgATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTa > 1:1497871/1‑76 (MQ=255) cggctttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTa > 1:1063516‑M1/49‑76 (MQ=255) gtgATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTTTTTTCGAAACGTAc > 2:144362/1‑76 (MQ=255) gATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCt > 2:462551/1‑76 (MQ=255) tttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTc > 1:484194‑M1/45‑76 (MQ=255) tttttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTc > 2:650161‑M1/45‑76 (MQ=255) aGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTTTTTCCGAAACGTACCTcag > 2:614440/1‑76 (MQ=255) aGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTCTTTTTTTTTCTCAACCTACATcac > 2:614441/1‑75 (MQ=255) ttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTcagc < 1:319237‑M1/35‑1 (MQ=255) ttttacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTcagc > 1:1211930‑M1/42‑76 (MQ=255) tCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTcagca < 1:1488326/76‑1 (MQ=255) tCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTcagca < 1:921201/76‑1 (MQ=255) cGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTcagcag > 2:895283/1‑76 (MQ=255) tacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAgg < 1:500116‑M1/38‑1 (MQ=255) tacctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAgg < 2:1214231‑M1/38‑1 (MQ=255) ctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGa > 1:1177204‑M1/36‑76 (MQ=255) ctgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGa < 1:802979‑M1/41‑1 (MQ=255) tgctctttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGaa < 2:1066011‑M1/42‑1 (MQ=255) gTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGaa < 2:189578/76‑1 (MQ=255) tAAGCGATNCTGCACCGTANCTCAGGCACCTTCGGGTGTCTTNTTTATTTCCGAAACGTACCTCAGCAGGTGAATa < 2:1287740/76‑1 (MQ=255) ctctgtatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATa < 2:1506512‑M1/44‑1 (MQ=255) ttatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAAtt < 1:1159729‑M1/48‑1 (MQ=255) tatcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAAttt < 2:535358‑M1/49‑1 (MQ=255) aTTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAAtttt > 2:1110279/1‑76 (MQ=255) ttCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTTTTTCCGAAACGTACCTCAGCAGGGGAATAAAttttt > 2:637181/1‑75 (MQ=255) tcaacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATACATTTTa < 2:1489374‑M1/51‑1 (MQ=255) tctgCACCTTACCNCAGGCACCTTAGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTAt < 1:198333/73‑1 (MQ=255) caacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTAt < 2:492266‑M1/52‑1 (MQ=255) caacctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTAt < 2:1035172‑M1/52‑1 (MQ=255) acctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTc > 2:156577‑M1/23‑76 (MQ=255) ctgcgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCat > 1:809534‑M1/21‑76 (MQ=255) cACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCat < 1:918039/76‑1 (MQ=255) aCCTTACCTCAGGCACCTTCGGGGGCCCTTTTTTTTTTCCAAACCTACCTCCCCAGGGGGAAAAATTTTTTTtata > 1:1246601/1‑76 (MQ=255) cgcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATAtt > 1:74373‑M1/18‑76 (MQ=255) ttACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTg > 2:1172522/1‑76 (MQ=255) gcctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTg < 1:249881‑M1/60‑1 (MQ=255) ctgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGtt > 2:862357‑M1/15‑76 (MQ=255) tgtccggttgacgCGGGTGCCTTTTTTGTTTCCGAAACGTACCANAGNAGGTGAATAAATTTNATTCATATTGTTa < 2:1382351‑M1/63‑1 (MQ=255) tgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTa > 2:730074‑M1/14‑76 (MQ=255) tgtccggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTa < 1:706835‑M1/63‑1 (MQ=255) tgtccggttgacgAGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTa < 1:99843‑M1/63‑1 (MQ=255) ccTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTa < 2:86849/76‑1 (MQ=255) cTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTAt > 2:1084493/1‑76 (MQ=255) tCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATc < 1:1294438/76‑1 (MQ=255) cAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATca > 2:401982/1‑76 (MQ=255) cAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATca > 2:401992/1‑76 (MQ=255) cAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATca < 2:256997/76‑1 (MQ=255) aGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATcaa > 2:1174460/1‑76 (MQ=255) aGGCACCTTCGGGGGCCTTTTTTTTTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTTTTCATATTGTTATcaa > 2:756636/1‑76 (MQ=255) ggttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATCAATTTTATTCNTATCGTtatctag < 1:195543‑M1/68‑4 (MQ=255) gCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATcaaca < 2:738568/76‑1 (MQ=255) ttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATcaacaa < 1:240649‑M1/70‑1 (MQ=255) ttgacgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATACATATTGTTATcaacaa > 1:279062‑M1/7‑76 (MQ=255) aCCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAg < 2:30498/76‑1 (MQ=255) aCCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAg < 1:1073714/76‑1 (MQ=255) aCCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAg > 1:248221/1‑76 (MQ=255) cTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCACCTAGtt < 1:90767/76‑1 (MQ=255) cTTCGGATGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGtt < 1:1401655/76‑1 (MQ=255) cgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTa < 1:547932‑M1/74‑1 (MQ=255) cgCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTa > 2:549076‑M1/3‑76 (MQ=255) gCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTAt > 1:603742‑M1/2‑76 (MQ=255) CGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTANCAACAAGTTATc > 1:14190‑M1/1‑76 (MQ=255) | CATGAATCCAACGCTGGATTAATCTTCTGTGATAGTCGATCGTTAAGCGATTCAGCACCTTACCTCAGGCACCTTCGGGTGCCTTTTTTATTTCCGAAACGTACCTCAGCAGGTGAATAAATTTTATTCATATTGTTATCAACAAGTTATC > REL606/4194633‑4194783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |