breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	2,296,329	0	A	C	47.7%	44.6 / 33.3	44	intergenic (‑149/‑66)	inaA/yfaH	hypothetical protein/hypothetical protein
*	REL606	3,492,082	0	T	G	43.4%	59.3 / 34.9	53	V490G (GTG→GGG)	glpD	sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding
*	REL606	4,393,061	0	T	G	38.5%	84.3 / 21.3	52	V211G (GTG→GGG)	aidB	isovaleryl CoA dehydrogenase
*	REL606	1,176,010	0	T	G	30.9%	139.5 / 20.9	68	A37A (GCA→GCC)	fhuE	ferric‑rhodotorulic acid outer membrane transporter
*	REL606	2,631,772	0	A	C	30.4%	95.2 / 11.9	46	intergenic (‑267/‑141)	rpoE/nadB	RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase
*	REL606	2,231,892	0	A	C	28.9%	67.1 / 14.1	38	T25P (ACC→CCC)	yejH	predicted ATP‑dependet helicase
*	REL606	1,484,105	0	A	G	28.0%	97.2 / 20.9	50	G55G (GGA→GGG)	ydcU	predicted spermidine/putrescine transporter subunit
*	REL606	1,688,990	0	A	C	26.2%	95.2 / 10.9	42	T92P (ACC→CCC)	nth	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
*	REL606	1,747,903	0	G	T	25.0%	193.4 / 49.6	76	A8S (GCA→TCA)	ydiL	hypothetical protein
*	REL606	275,418	0	A	C	24.0%	107.2 / 13.5	50	F528V (TTT→GTT)	yagW	predicted receptor
*	REL606	1,875,483	0	G	C	20.8%	229.8 / 41.8	77	intergenic (+156/‑28)	yeaB/sdaA	predicted NUDIX hydrolase/L‑serine deaminase I

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	4458599 =	71 (1.200)	3 (0.060)	3/130	7.3	4.9%	intergenic (+8/‑115)	yjgK/yjgL	hypothetical protein/hypothetical protein
	?	REL606	4458629 =	56 (1.100)					intergenic (+38/‑85)	yjgK/yjgL	hypothetical protein/hypothetical protein