breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	4,393,061	0	T	G	51.4%	24.1 / 52.2	35	V211G (GTG→GGG)	aidB	isovaleryl CoA dehydrogenase
*	REL606	3,492,082	0	T	G	50.0%	38.2 / 21.4	44	V490G (GTG→GGG)	glpD	sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding
*	REL606	2,296,329	0	A	C	48.7%	33.5 / 28.6	39	intergenic (‑149/‑66)	inaA/yfaH	hypothetical protein/hypothetical protein
*	REL606	273,581	0	T	G	36.2%	96.8 / 11.1	58	G136G (GGT→GGG)	yagU	conserved inner membrane protein
*	REL606	1,484,105	0	A	G	34.2%	65.6 / 19.4	41	G55G (GGA→GGG)	ydcU	predicted spermidine/putrescine transporter subunit
*	REL606	154,497	0	T	G	31.8%	134.9 / 20.4	66	A191A (GCA→GCC)	yadL	predicted fimbrial‑like adhesin protein
*	REL606	2,631,772	0	A	C	31.4%	67.8 / 10.2	35	intergenic (‑267/‑141)	rpoE/nadB	RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase
*	REL606	4,195,874	0	A	C	29.4%	109.2 / 11.8	52	T318P (ACC→CCC)	aceB	malate synthase
*	REL606	4,574,252	0	T	G	25.6%	80.3 / 10.3	39	S5S (TCA→TCC)	hpaX	hypothetical 4‑hydroxyphenylacetate permease
*	REL606	2,417,495	0	T	A	24.1%	153.2 / 12.3	54	L24F (TTA→TTT)	emrK	EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component
*	REL606	2,448,098	0	T	G	22.9%	116.1 / 11.1	48	F278V (TTT→GTT)	nupC	nucleoside (except guanosine) transporter
*	REL606	1,747,903	0	G	T	22.9%	208.7 / 40.9	70	A8S (GCA→TCA)	ydiL	hypothetical protein
*	REL606	2,568,967	0	A	C	22.0%	135.5 / 10.9	60	G1380G (GGT→GGG)	yfhM	hypothetical protein