breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
JC	433,502	(AAGAG)2→1		[hupB]	[hupB]
RA	1,183,573	(A)6→5	intergenic (‑147/‑94)	ycfQ ← / → ycfR	predicted DNA‑binding transcriptional regulator/hypothetical protein
RA	1,290,472	Δ1 bp	coding (437/1014 nt)	hnr →	response regulator of RpoS
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	2,997,463	(A)9→8	coding (131/903 nt)	ECB_02798 →	conserved hypothetical protein
RA	3,029,249	Δ1 bp	intergenic (‑788/+273)	ECB_02828 ← / ← yghD	Polysialic acid transport protein kpsM/predicted secretion pathway M‑type protein, membrane anchored
RA	3,147,776	G→A	intergenic (+71/+8)	rpoD → / ← ygjF	RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase
JC	3,326,715	+AAT	coding (52/489 nt)	mreD ←	cell wall structural complex MreBCD transmembrane component MreD
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	3,911,972	(T)7→6	intergenic (‑173/‑150)	yifB ← / → ilvL	predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide
MC JC	4,163,094	Δ3 bp	coding (2239‑2241/4029 nt)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	4,168,904	C→T	A1315V (GCA→GTA)	rpoC →	DNA‑directed RNA polymerase subunit beta'
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)