mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 48.1% | 46.0 / 32.6 | 52 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,004,106 | 0 | A | C | 44.2% | 63.6 / 26.4 | 52 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 1,484,105 | 0 | A | G | 36.1% | 59.2 / 16.2 | 36 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 4,393,061 | 0 | T | G | 32.4% | 63.3 / 10.7 | 37 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 3,983,700 | 0 | T | G | 32.4% | 54.8 / 11.9 | 34 | T397P (ACC→CCC) | ECB_03713 | conserved hypothetical protein |
| * | REL606 | 2,296,329 | 0 | A | C | 31.1% | 124.8 / 23.8 | 61 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 4,574,252 | 0 | T | G | 30.6% | 65.5 / 19.7 | 36 | S5S (TCA→TCC) | hpaX | hypothetical 4‑hydroxyphenylacetate permease |
| * | REL606 | 3,733,719 | 0 | C | G | 30.0% | 85.8 / 13.8 | 40 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| * | REL606 | 4,195,874 | 0 | A | C | 26.7% | 141.5 / 12.0 | 60 | T318P (ACC→CCC) | aceB | malate synthase |
| * | REL606 | 154,497 | 0 | T | G | 26.2% | 143.2 / 10.8 | 61 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 1,747,903 | 0 | G | T | 21.3% | 181.6 / 31.8 | 61 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4405197 | 82 (1.330) | 4 (0.070) | 4/134 | 7.0 | 5.2% | coding (895/1278 nt) | ECB_04071 | Hexuronate transporter |
| ? | REL606 | = 4405202 | 72 (1.310) | coding (890/1278 nt) | ECB_04071 | Hexuronate transporter | |||||
| * | ? | REL606 | 391035 = | 84 (1.360) | 4 (0.070) | 4/138 | 7.1 | 4.8% | coding (98/1818 nt) | malZ | maltodextrin glucosidase |
| ? | REL606 | 391054 = | 82 (1.450) | coding (117/1818 nt) | malZ | maltodextrin glucosidase | |||||