mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC | 547,700 | Δ42,623 bp | between IS1 | [nmpC]–[insK‑1] | 44 genes [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, ECB_00513, ECB_00514, ECB_00515, ECB_00516, ECB_00517, appY, ompT, envY, ybcH, nfrA, nfrB, nfrB, ECB_00524, yhhI, ECB_00526, ECB_00527, ECB_00528, ECB_00529, ECB_00530, cusS, cusR, cusC, ylcC, cusB, cusA, pheP, ybdG, nfnB, ybdF, ybdJ, ybdK, insJ‑1, insK‑1, insB‑7, insA‑7, [insK‑1] |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,332,148 | (T)6→5 | intergenic (+131/‑79) | topA → / → cysB | DNA topoisomerase I/DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
| MC JC | 1,670,487 | Δ9 bp | coding (964‑972/1374 nt) | uidB ← | glucuronide transporter |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,781,131 | T→C | intergenic (+52/‑26) | ygcM → / → ygcN | 6‑pyruvoyl tetrahydrobiopterin synthase (PTPS)/predicted oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 2,844,557 | C→T | R233W (CGG→TGG) | argA → | N‑acetylglutamate synthase |
| RA | 3,147,053 | G→A | R397H (CGT→CAT) | rpoD → | RNA polymerase sigma factor |
| RA | 3,339,247 | A→G | D29G (GAC→GGC) | fis → | DNA‑binding protein Fis |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,929,372 | A→G | I386V (ATC→GTC) | rho → | transcription termination factor Rho |
| RA | 4,162,570 | T→A | I572N (ATC→AAC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,438,531 | T→G | D110A (GAC→GCC) | fbp ← | fructose‑1,6‑bisphosphatase |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3014207 = | 6 (0.100) | 53 (0.860) | 42/150 | 0.4 | 89.8% | coding (788/1137 nt) | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 | = 3014214 | NA (NA) | coding (795/1137 nt) | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE | |||||