| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 4,202,621 | Δ579 bp | [metH] | [metH] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4202621 | 4203199 | 579 | 44 [1] | [1] 43 | [metH] | [metH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4202620 | 1 (0.020) | 42 (0.790) | 38/150 | 0.4 | 97.7% | intergenic (‑61/‑139) | iclR/metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| ? | REL606 | 4203200 = | 1 (0.020) | coding (442/3684 nt) | metH | B12‑dependent methionine synthase | |||||
GCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4202552‑4202620‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCTGGTGG > REL606/4203200‑4203272 GCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGG < 2:290977/76‑1 CCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCCATGATCCGGCATT > 2:420518/1‑76 ATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTC > 2:1386204/1‑76 ATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTC < 1:721025/76‑1 GACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGT < 1:1343100/76‑1 CAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAA < 2:354326/76‑1 CAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAA < 2:1592240/76‑1 GTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATA < 1:140290/76‑1 TCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATAT < 1:1314004/76‑1 TCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATAT > 1:786987/1‑76 TCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCA < 1:494169/76‑1 CCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCAC > 2:905108/1‑76 TTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTT > 1:1045847/1‑76 TTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTT > 1:784762/1‑76 TTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTT < 1:1570418/76‑1 TTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTT < 2:652614/76‑1 TTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTT < 1:674689/76‑1 TTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTG > 1:914213/1‑76 GTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGG > 2:416724/1‑76 TATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGG > 1:1475696/1‑76 CGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTG < 2:112883/76‑1 GGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTG < 1:267029/76‑1 GAAATCATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGG > 1:217377/1‑76 CATTTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCC > 1:519275/1‑76 ATTTTCATTTTTATTGTTAGCTGATGCGATGGTCCGGCGTTTCGTGATATCACTTTTGACGGGCTGGTGGCGGCCT < 2:814186/76‑1 TTTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTAT > 1:862252/1‑76 TTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATC > 1:1614565/1‑76 TTCATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATC < 2:590279/76‑1 ATTTTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAG < 2:1624268/76‑1 TTTATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGT > 1:169853/1‑76 TATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCC > 2:711168/1‑76 TATTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCC > 1:1386536/1‑76 TTGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGGGGCGGCCTATCGAGAGTCCAC > 1:1368087/1‑76 TGTTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACC > 1:94069/1‑76 TTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAA > 1:907268/1‑76 TTAGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAA < 1:192075/76‑1 AGCTAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAG > 1:434962/1‑76 CTAAGGCAATGATCCGGCATTGCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCG < 2:621819/76‑1 TAATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGC > 2:1524889/1‑76 AATGCAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCT > 1:1155686/1‑76 CAATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCTGGTG > 1:1143448/1‑76 AATGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCTGGTGG < 2:1157285/76‑1 GCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4202552‑4202620‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCTGGTGG > REL606/4203200‑4203272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |