| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 4,202,621 | Δ579 bp | [metH] | [metH] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4202621 | 4203199 | 579 | 44 [1] | [1] 43 | [metH] | [metH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4202620 | 1 (0.020) | 42 (0.790) | 38/150 | 0.4 | 97.7% | intergenic (‑61/‑139) | iclR/metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| ? | REL606 | 4203200 = | 1 (0.020) | coding (442/3684 nt) | metH | B12‑dependent methionine synthase | |||||
AAACCGCGCTACGTTGCCGGTGTTCTCGGCCCAACCAACCGCACGGCGTCTATTTCTCCGGACGTCAACGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCTGGTGG > REL606/4203131‑4203272 | gcgaccatgacagtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCgg < 2:290977‑M2/7‑1 (MQ=255) ccatgacagtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgccatGATCCGGCAtt > 2:420518‑M2/66‑76 (MQ=255) atgacagtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTc > 2:1386204‑M2/64‑76 (MQ=255) atgacagtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTc < 1:721025‑M2/13‑1 (MQ=255) gacagtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGt < 1:1343100‑M2/15‑1 (MQ=255) cagtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTaa < 2:354326‑M2/17‑1 (MQ=255) cagtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTaa < 2:1592240‑M2/17‑1 (MQ=255) gtctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAata < 1:140290‑M2/19‑1 (MQ=255) tctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAatat < 1:1314004‑M2/20‑1 (MQ=255) tctcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAatat > 1:786987‑M2/57‑76 (MQ=255) tcctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCa < 1:494169‑M2/22‑1 (MQ=255) cctttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCAc > 2:905108‑M2/54‑76 (MQ=255) ttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACttt > 1:784762‑M2/51‑76 (MQ=255) ttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACttt > 1:1045847‑M2/51‑76 (MQ=255) ttttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACttt < 1:1570418‑M2/26‑1 (MQ=255) tttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACtttt < 2:652614‑M2/27‑1 (MQ=255) tttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACtttt < 1:674689‑M2/27‑1 (MQ=255) ttctgtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTg > 1:914213‑M2/49‑76 (MQ=255) ctcGGCCCAACCAACCGCACGGCGTCTATTTCTCCGGACGTCAACGATCCGGCATTTCGTAATATCACTTTTGACg > 1:1126951/1‑76 (MQ=255) gtatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACgg > 2:416724‑M2/45‑76 (MQ=255) tatcgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACggg > 1:1475696‑M2/44‑76 (MQ=255) cgtggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCtg < 2:112883‑M2/36‑1 (MQ=255) ggaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCtggtg < 1:267029‑M2/39‑1 (MQ=255) gaaatcattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCtggtgg > 1:217377‑M2/37‑76 (MQ=255) cattttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGcc > 1:519275‑M2/32‑76 (MQ=255) attttcatttttattgttagctgatgcgatGGTCCGGCGTTTCGTGATATCACTTTTGACGGGCTGGTGGCGGCCt < 2:814186‑M2/46‑1 (MQ=255) tttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTAt > 1:862252‑M2/29‑76 (MQ=255) ttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATc > 1:1614565‑M2/28‑76 (MQ=255) ttcatttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATc < 2:590279‑M2/49‑1 (MQ=255) atttttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCgag < 2:1624268‑M2/52‑1 (MQ=255) tttattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGt > 1:169853‑M2/22‑76 (MQ=255) tattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTcc > 2:711168‑M2/20‑76 (MQ=255) tattgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTcc > 1:1386536‑M2/20‑76 (MQ=255) ttgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGGGGCGGCCTATCGAGAGTccac > 1:1368087‑M2/18‑76 (MQ=255) tgttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTccacc > 1:94069‑M2/17‑76 (MQ=255) ttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCaa < 1:192075‑M2/62‑1 (MQ=255) ttagctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCaa > 1:907268‑M2/15‑76 (MQ=255) agctaatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAg > 1:434962‑M2/13‑76 (MQ=255) ctaaggcaatGATCCGGCATTGCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAgcg < 2:621819‑M2/66‑1 (MQ=255) taatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAgcgc > 2:1524889‑M2/10‑76 (MQ=255) aatgcaatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCt > 1:1155686‑M2/9‑76 (MQ=255) caatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCtggtg > 1:1143448‑M2/5‑76 (MQ=255) aatGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCtggtgg < 2:1157285‑M2/73‑1 (MQ=255) | AAACCGCGCTACGTTGCCGGTGTTCTCGGCCCAACCAACCGCACGGCGTCTATTTCTCCGGACGTCAACGATCCGGCATTTCGTAATATCACTTTTGACGGGCTGGTGGCGGCCTATCGAGAGTCCACCAAAGCGCTGGTGG > REL606/4203131‑4203272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |